Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00315
(746 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi... 102 5e-23
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 40 5e-04
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 35 0.014
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 32 0.076
SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr 1|||... 31 0.17
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.93
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 28 1.2
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 28 1.6
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce... 27 2.8
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar... 27 3.8
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 3.8
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 26 6.6
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 6.6
>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
Pin1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 175
Score = 102 bits (245), Expect = 5e-23
Identities = 46/86 (53%), Positives = 60/86 (69%)
Frame = +2
Query: 263 EVRCSHLLVKHSGSRRPSSWREEHITRTKEEALDILQEYRRKIIDREAKFEELASTYSDC 442
++R SHLLVKH SRRPSSW+EEHITR+KEEA + + Y + + +LA SDC
Sbjct: 66 KIRASHLLVKHRESRRPSSWKEEHITRSKEEARKLAEHYEQLLKSGSVSMHDLAMKESDC 125
Query: 443 SSAKRDGDLGRFKKGQMQKPFETSHF 520
SSA+R G+LG F + +MQKPFE + F
Sbjct: 126 SSARRGGELGEFGRDEMQKPFEDAAF 151
Score = 32.7 bits (71), Expect = 0.057
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 111 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 203
LP+ W + SRS Y+ N T +S WE P
Sbjct: 6 LPKPWIVKISRSRNRPYFFNTETHESLWEPP 36
Score = 31.9 bits (69), Expect = 0.100
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 469 GSFQERSNAETI*NVAFSLKIGQLSQPVHTDSGIHIILRTA 591
G F + + AF+LK G++S V T SG HII R A
Sbjct: 135 GEFGRDEMQKPFEDAAFALKPGEISGVVETSSGFHIIQRHA 175
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 39.5 bits (88), Expect = 5e-04
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +3
Query: 39 RKRKNLLAFPAQRTNDMASTQEEI--LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 203
R+ N A + M+S +++ LP GWE R++ S G TYY++ +T+ + W +P
Sbjct: 212 RQTNNTSALSNSNAHIMSSFEDQYGRLPPGWE-RRADSLGRTYYVDHNTRTTTWTRP 267
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 34.7 bits (76), Expect = 0.014
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 111 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGPAS 218
LP GWE R + +T Y+++ +TK + W+ P P+S
Sbjct: 347 LPSGWEMRLT-NTARVYFVDHNTKTTTWDDPRLPSS 381
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 32.3 bits (70), Expect = 0.076
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 111 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 203
LP GW K+ S G+ YY N KKS +++P
Sbjct: 5 LPPGWTEHKAPS-GIPYYWNAELKKSTYQRP 34
>SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 235
Score = 31.1 bits (67), Expect = 0.17
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +2
Query: 263 EVRCSHLLVKHSGSRRPSSWREEHITRTKEEALDILQEYRRKIIDREAKFEELASTYSDC 442
++ S L + S S + E + K++A +QE+R+K + KF+EL + D
Sbjct: 42 QISASFLSLSRSIDDYDSMVQRELVPAKKKKATIRIQEFRQKHVQLLEKFDELKAHVRDI 101
Query: 443 SSAKRDGDL 469
+ AK +L
Sbjct: 102 AQAKNRKEL 110
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.7 bits (61), Expect = 0.93
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 105 EILPEGWEARKSRSTGMTYYLNKHTK--KSQWEKP 203
E LP GW A+ G +Y+N+ + + QWE P
Sbjct: 8 EGLPSGWVAQWDAEYGTYFYVNESAQNPQPQWEPP 42
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 123 WEARKSRSTGMTYYLNKHTKKSQWEKP 203
W K+ + + YY N T+KS WEKP
Sbjct: 36 WHEVKTEDSRV-YYYNSVTRKSVWEKP 61
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +3
Query: 87 MASTQEEILPEGWEARKSRSTGMTYYLNKHTKKS--QWEKP 203
MA E LP GW A+ +Y+N+ K+ QWE P
Sbjct: 1 MAYQTREGLPNGWVAQWDERYKCYFYVNESDPKAKPQWECP 41
>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 851
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 3 ARGNVKNFLLQLRKRKNLLAFPAQRTNDMASTQEEILPE 119
+R + N LL+ +KR + F QR+ AST + L E
Sbjct: 145 SRPSFDNILLENKKRVSFYPFSVQRSQKFASTLKMCLEE 183
>SPAC1B3.08 |||COP9 signalosome complex subunit 12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 423
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 404 AKFEELASTYSDCSSAKRDGDLGRFKK 484
+KF LAS Y + A + G+LG F K
Sbjct: 295 SKFPNLASVYIPLTRALKSGNLGEFGK 321
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +2
Query: 317 SWREEHITRTKEEALDILQEYRRKIIDREAKFEELASTYSDCSSAKRDGDLGRFKK 484
S REE IT + E LD+ + ++E+ +ELA D + ++D L FKK
Sbjct: 999 STREEKITSLRSELLDLNKRVEVLKEEKESSSKELAKQLED-AVREKDSALS-FKK 1052
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 329 EHITRTKEEALDILQEYRRKI-IDREAKFEELASTYSD 439
E++ K + ++ E R + REAKFE L ++ SD
Sbjct: 761 EYVLYKKSKGSQVITEKARSNELSREAKFENLVASLSD 798
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -1
Query: 470 PNPHHVL-LMNNQNMYLPALQI 408
P P HV +M+++N YL ALQ+
Sbjct: 532 PKPSHVKNIMHHENQYLQALQL 553
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,399
Number of Sequences: 5004
Number of extensions: 56627
Number of successful extensions: 169
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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