Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00314
         (738 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    29   0.052
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       27   0.21 
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    25   0.64 
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    25   0.64 
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   5.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.9  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    21   7.9  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 28.7 bits (61), Expect = 0.052
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +1

Query: 511 CLTNSTCGPNAECFVQKNQPLCRCRVGFEG 600
           C TN  C   A C   KNQ  C C VG+ G
Sbjct: 103 CSTNP-CENQATCVQNKNQYQCLCGVGWTG 131



 Score = 27.1 bits (57), Expect = 0.16
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 392 CSCRNGYEGDPYRTCRVVGCRTNSECDTREACIN-GNCIN 508
           C+C  G+ G        + C+TN E  T  +C+N G CI+
Sbjct: 9   CTCPLGFSG--------INCQTNDEDCTETSCMNGGTCID 40



 Score = 24.6 bits (51), Expect = 0.84
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
 Frame = +1

Query: 511 CLTNSTCGPNA-ECFVQKNQPLCRCRVGFEG---DAYLG-CNAIECRSNGDCPRDKQCKA 675
           CL+N        +C    N   C C++GF G   ++ +  C    C++ G C        
Sbjct: 302 CLSNPCSNAGTLDCVQLVNDYHCNCKLGFMGRHCESKVNFCATSPCQNGGVCTTIH--AG 359

Query: 676 HRCINP 693
           H+C  P
Sbjct: 360 HKCTCP 365



 Score = 24.2 bits (50), Expect = 1.1
 Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 3/82 (3%)
 Frame = +3

Query: 36  CQKATVLNEPECIMDGDCPSGHACLKDECREACSELKP--CKGNSRCSVSDSIPFRTLIC 209
           CQ     ++        CPSG   L   C     + +P  C  N  C   D +      C
Sbjct: 231 CQNGGTCHDLVNSFSCSCPSG--TLGYICEINVDDCRPGACHNNGTCL--DKVG--GFEC 284

Query: 210 RCPEGFV-PSEDGSCKRPIYHP 272
           +CP GFV P  +G     + +P
Sbjct: 285 KCPPGFVGPRCEGDINECLSNP 306



 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/12 (66%), Positives = 9/12 (75%), Gaps = 1/12 (8%)
 Frame = +3

Query: 57  NEPECIMDG-DC 89
           N PEC+ DG DC
Sbjct: 548 NNPECLFDGRDC 559


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
 Frame = +2

Query: 392 CSCRNGYEGDPYRT----CRVVGCRTNSECDTREACINGNCIN 508
           C C+ G+EG         C    CR N  C  R A    NC N
Sbjct: 92  CICKEGWEGALCNINTDDCSPNPCRNNGSCVDRIADFECNCKN 134



 Score = 26.2 bits (55), Expect = 0.28
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
 Frame = +1

Query: 511 CLTNSTCGPNAECFVQKNQPLCRCRVGFEGDAYL----GCNAIECRSNGDC 651
           C  N  C     C  + N   C C+ G+EG         C+   CR+NG C
Sbjct: 72  CKVNP-CENGGTCVDKINAFQCICKEGWEGALCNINTDDCSPNPCRNNGSC 121



 Score = 25.0 bits (52), Expect = 0.64
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 392 CSCRNGYEGDPYRTCRVVGCRTNSECDTREACINGNCINL 511
           C+C+NG++G   +TC +     +S CD       G C +L
Sbjct: 130 CNCKNGWKG---KTCSL----KDSHCDHTTCKNGGTCQDL 162


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
 Frame = -3

Query: 685 YICELYIAYHVDNLRLIYILSHYNLNRRL----LQIQHDNDTAVGSFERSIRHLVHMCCL 518
           +ICEL+  + V N+  ++ + + +LN+ L    + +    DTAV       R L      
Sbjct: 115 HICELHTIFLVCNVLTVFKIRYKDLNKALESSKISVGLIRDTAV-----LYRLLADNVAN 169

Query: 517 LNKIYTISIYTSFSGVTL*ICTATHNA--TSAVRISFVSITA*TNRSMIFNKTIRVITTV 344
            NKI+  S+   F  + L + ++       S  + +F    A  + S+     + VI  +
Sbjct: 170 FNKIFGWSLIFLFGRIVLQLLSSLGFLLYASKKQFTFEETFAIIHLSVFVYTLVSVILII 229

Query: 343 TWISAISVNTR 311
                ++ N+R
Sbjct: 230 MGCDVVASNSR 240


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = +1

Query: 574 CRCRVGFEGDAYLGCNAI-ECRSNGDCPRDKQ----CKAHRCINPCFI 702
           C     F G  Y   ++I EC++NG+C  +K+    CKA R +  C +
Sbjct: 22  CEGCKSFFGRTYNNISSISECKNNGECVINKKNRTACKACR-LRKCLL 68


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -2

Query: 551 KHSAFGPHVLFVKQDLYNFHLYKLL 477
           +  A+GP +++  QD+ +   Y L+
Sbjct: 272 RFGAYGPDMIYTPQDIRDLLQYSLV 296


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 605 ASPSNPTRQRHSGW 564
           A+P N    RHS W
Sbjct: 349 AAPGNSASNRHSAW 362


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -3

Query: 613 LNRRLLQIQHDNDTAVGSF---ERSIRHLVHMCCLLNKIYTISIYTSF 479
           + RR+  +  +  T+  S+         L H+C LL++  +  I TSF
Sbjct: 246 ITRRIAAVASEKVTSEKSWIALNDDYNRLCHLCFLLDEKLSYIILTSF 293


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,114
Number of Sequences: 336
Number of extensions: 4767
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)