Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00314
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    29   0.52 
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    26   6.4  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    26   6.4  
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...    25   8.5  

>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -3

Query: 79  SIIHSGSF-NTVAFWQ*TEGSPIG 11
           SII +GS  NT+ FW   +GSPIG
Sbjct: 190 SIIATGSMDNTIRFWDPKKGSPIG 213


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 359 RYHHSYMDFCNFC*HKTLGLCS 294
           RY  S   FC+F  H  L LCS
Sbjct: 284 RYDKSLGKFCSFLNHNLLSLCS 305


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 99  DRWGNHRPLYTQVRLIPSLFGNEQKD 22
           D  GNH  + +     P LF NE+KD
Sbjct: 415 DNEGNHSLILSSKTKSPQLFNNEKKD 440


>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/73 (20%), Positives = 31/73 (42%)
 Frame = +3

Query: 126 EACSELKPCKGNSRCSVSDSIPFRTLICRCPEGFVPSEDGSCKRPIYHPLVALRIMTAQT 305
           + CS+L     + +  V   +   T I +      P+ +GS     Y   +  R++   +
Sbjct: 34  KVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRKTPNGEGSKTWETYEMRIHKRLIDLHS 93

Query: 306 KSLVLTEIAEIHV 344
            S ++ +I  IH+
Sbjct: 94  PSEIVKQITSIHI 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,269,187
Number of Sequences: 5004
Number of extensions: 72939
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)