Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00314
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.24 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   6.9  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   9.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 142 SSEQASRHSSLRQA*PLGQSPSIIHSGSFNTVAFWQ 35
           +S   + +SS R + P  +S S+  SGS NTVA W+
Sbjct: 541 NSGNGNTNSSARDSSPAIESISV-DSGSINTVAEWE 575


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 290 YPKSNQGVVNWPLAATIFRRYKAF 219
           +P    GV  WP    I   Y+AF
Sbjct: 275 HPLYGHGVCKWPGCEVICEDYQAF 298


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 371 VKDHRPICSCRNGYEGDPYRTCRVVG 448
           VK+  P C+  N  +    R C +VG
Sbjct: 149 VKNFHPRCAVNNYNDPSNVRNCELVG 174


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 662 LSRGQSPFDLHSIALQPK*ASPSNPTRQR 576
           L+   SP    S ALQP+     NP +Q+
Sbjct: 89  LANANSPVGSPSAALQPQHVVYGNPQQQQ 117


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 659 ISNVKLTDVLILASLTIY 712
           + N+KLTD LI A   ++
Sbjct: 284 LENIKLTDSLIAAQAFVF 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,600
Number of Sequences: 438
Number of extensions: 5057
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)