Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00313
         (590 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    27   0.12 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   3.4  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   4.5  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   7.8  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   7.8  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   7.8  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 321 YLLSLVVALTDERKLFVHIVAPRKPLILSRLVTFPSPQ*ST 199
           YL SL  +L    +LF H  AP +P+ L      PSP+ S+
Sbjct: 46  YLFSL--SLAQNNQLFTHHKAPIRPVALPPKREIPSPKRSS 84


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 434 LQTSPGLSTRPKSVVAYGYS 493
           L  SPG  + P +V++ GYS
Sbjct: 117 LTPSPGPPSHPYTVISNGYS 136


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
 Frame = +2

Query: 290 SVRATTRESKYPTGSPSCPWTTATLPVTSETAASKLLPSARGRSLSVALQTSPGLST-RP 466
           S       S  P  +PS    T +  +TS  + S   P     S +    +SP  ST   
Sbjct: 117 STNGAPPRSTPPLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTTSQNLSSPASSTSST 176

Query: 467 KSVVAYGYSDNSDDSKISS 523
            S    G ++N+  S  SS
Sbjct: 177 SSTEKAGTNNNNSKSSQSS 195


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -2

Query: 373 CNWKCRCRPRTRRGSCWVFAFPRCGP 296
           CN K  C+  +   SC V   P   P
Sbjct: 135 CNGKPDCKDESDENSCTVETDPNRAP 160


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 168 FTRWYIPK*GIGEYA 124
           F+ W I + GIG YA
Sbjct: 28  FSNWAIYRPGIGRYA 42


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 252 SSELQCERTVCARQ*GPQRGKANTQQDPRRVR 347
           +S+L+C+R +     GPQ+  A+  +   R R
Sbjct: 64  NSDLRCKRKIQFMPYGPQQQPASVARRNARER 95


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,734
Number of Sequences: 336
Number of extensions: 2764
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14830622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)