Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00313
(590 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 1.2
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 27 1.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.5
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.0
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 26 3.6
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 26 3.6
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 26 4.7
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 26 4.7
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 26 4.7
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 25 6.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.3
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug... 25 8.3
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 25 8.3
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +2
Query: 374 SETAASKLLPSARGRSLSVALQTSPGLSTRPKSVVAYGYSDNSDDSKISSVSLAKTAYTM 553
++T + S+ G + +S ST+P AY + S + SLA+T +
Sbjct: 59 ADTPSRNTPNSSNGFPSETLVTSSAHCSTQPHKDEAYSHHGYSSTMALDDSSLAQTYHEY 118
Query: 554 EPGTN 568
E GT+
Sbjct: 119 EEGTS 123
>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 629
Score = 27.5 bits (58), Expect = 1.5
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +2
Query: 401 PSARGRSLSVALQTSPGLSTRPKSVVAYGYSDNSDDSKISSVSLAKTAYTMEPGTNYP 574
PS+ G SL+V+ QTS ST P ++ DD +++ L+++ ++ + YP
Sbjct: 29 PSSYGSSLNVSEQTSGSSSTSPLPQISCLL--RKDDVPLANKELSRSLIHVQELSRYP 84
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 1.5
Identities = 23/86 (26%), Positives = 34/86 (39%)
Frame = +2
Query: 323 PTGSPSCPWTTATLPVTSETAASKLLPSARGRSLSVALQTSPGLSTRPKSVVAYGYSDNS 502
PT + S ++ LP TS + + G S + T P ST S S +S
Sbjct: 265 PTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSS 324
Query: 503 DDSKISSVSLAKTAYTMEPGTNYPQT 580
+ SS L T+ + T+ P T
Sbjct: 325 TGT--SSSPLPSTSTSCTTSTSIPPT 348
Score = 26.6 bits (56), Expect = 2.7
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
Frame = +2
Query: 272 TNS--LRSSVRATTRESKYPTGSPSCPWT--TATLPVTSETAASKLLPSARGRSLSVALQ 439
TNS L ++ + T + PTG S T T T+P TS ++ S +P S
Sbjct: 217 TNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSS 276
Query: 440 TSPGLSTRPKSVVAYGYSDNSDDSKISSVSLAKTAYTMEP 559
P ST + + + NS +V T+ T P
Sbjct: 277 PLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTP 316
Score = 25.0 bits (52), Expect = 8.3
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = +2
Query: 287 SSVRATTRESKYPTGSPSCPWT--TATLPVTSETAASKLLPSARGRSLSVALQTSPGLST 460
+S TT S PTG S T T T+P TS ++ S +P S P ST
Sbjct: 168 TSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST 227
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.1 bits (57), Expect = 2.0
Identities = 19/84 (22%), Positives = 42/84 (50%)
Frame = +2
Query: 272 TNSLRSSVRATTRESKYPTGSPSCPWTTATLPVTSETAASKLLPSARGRSLSVALQTSPG 451
++S SS +++ +S + S S ++++ S + S S++ S S T+P
Sbjct: 174 SSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTTPA 233
Query: 452 LSTRPKSVVAYGYSDNSDDSKISS 523
S+ ++V+ + ++DDS +S
Sbjct: 234 SSSSSGAIVSNAKTASTDDSSSAS 257
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 26.2 bits (55), Expect = 3.6
Identities = 23/84 (27%), Positives = 33/84 (39%)
Frame = +2
Query: 311 ESKYPTGSPSCPWTTATLPVTSETAASKLLPSARGRSLSVALQTSPGLSTRPKSVVAYGY 490
E+KYPT SP+ + + P T A+ SA SL G ++ A Y
Sbjct: 251 EAKYPTVSPTNEPSAHSRPSPQGTTANS--SSASISSLHNTTPDGEGKYRSVQNGRALNY 308
Query: 491 SDNSDDSKISSVSLAKTAYTMEPG 562
+ + S +YT EPG
Sbjct: 309 VSSFNSDSHSPKDYISQSYTNEPG 332
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 3.6
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Frame = +2
Query: 290 SVRATTRESKYPTGSPSCPWTTATLPVTSETAA----SKLLPSARGRSLSVALQTSPGLS 457
S R + +E PT + P T +LPV S A + +P S++V +S L
Sbjct: 409 SARDSRQEKTQPTNASPAPLVTPSLPVPSIPAVPGMEAMAMPPGVTSSIAVPTTSSMPLQ 468
Query: 458 TRPKSVVAYGYS 493
P A G S
Sbjct: 469 GMPTMFGAPGVS 480
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +2
Query: 194 HQVDYWGEGKVTNLDKIRGFLGATM*TNSLRSSVRATTRESKY 322
H D W G +TN +++G LG ++ R + T ++ Y
Sbjct: 135 HIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQTDKKPSY 177
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 183 LSIGIFTRWYIPK*GIGEYAYNR 115
LSI F +WY+ I E+ Y R
Sbjct: 13 LSISFFLQWYLANTWIAEFLYRR 35
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.8 bits (54), Expect = 4.7
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -3
Query: 447 GDVCSATLSDRPRADGNSFDAAVSDVTGSVAVVHGHDGDPVGYLLSLVVALTDERKL 277
G+V S T S + NSFD VT ++ GD G L + + D K+
Sbjct: 583 GEVTSFTKSSTFTSATNSFDLIWKKVTSMYKTINVDPGDVRGIGLQALKIIKDNSKI 639
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 332 SPSCPWTTATLPVT-SETAASKLLPSARGRSLSVALQTSPGLSTRP 466
SPS P+ T LPVT + + P+A+ + ++ P +S P
Sbjct: 261 SPSLPFKTPLLPVTKTPLEEANSSPAAQNQHITTVDHVHPQVSMTP 306
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 8.3
Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Frame = +2
Query: 287 SSVRATTRESKYPTGSPSCPWTTATLPVTSETAASKLLPSARGRSLSVAL--QTSPGLST 460
SS ++T S PT + S +++++ +S + +S + SLS + TS S+
Sbjct: 190 SSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSS 249
Query: 461 RPKSVVAYGYSDNSDDSKISSVSLAKTAYTMEPGTNYPQT 580
S+ + S + S SS ++ ++ + T+ T
Sbjct: 250 TSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSST 289
>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 494 QNIRRQRPTSDALTILATSAAQRLVIGPVLMV 399
+N PT DA+ L TSA Q L+ P+ MV
Sbjct: 313 RNFLGSSPTLDAMVGLGTSAVQFLLKCPLEMV 344
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 25.0 bits (52), Expect = 8.3
Identities = 23/90 (25%), Positives = 38/90 (42%)
Frame = +2
Query: 290 SVRATTRESKYPTGSPSCPWTTATLPVTSETAASKLLPSARGRSLSVALQTSPGLSTRPK 469
SV RE +G + + TLP S A S + P GRS S G + RP+
Sbjct: 383 SVINNAREHCINSGISANRILSPTLPSFSAKATSIINPQVNGRSNSTG---KIGKNYRPR 439
Query: 470 SVVAYGYSDNSDDSKISSVSLAKTAYTMEP 559
+ ++ ++S++ + T T+ P
Sbjct: 440 RTYSGRLLCGPNNYEVSTIMRSPTISTVPP 469
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,352,495
Number of Sequences: 5004
Number of extensions: 47402
Number of successful extensions: 156
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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