Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00313
(590 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072... 31 0.69
09_06_0001 + 20114108-20115686,20115813-20115928,20116416-201173... 30 1.2
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135 30 1.2
03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012 30 1.2
01_05_0645 - 23899579-23904483 30 1.2
01_01_1116 + 8839946-8840048,8840142-8842064,8842192-8842307,884... 30 1.2
10_05_0054 - 8611989-8612309,8612350-8612566,8613047-8613284,861... 30 1.6
02_02_0536 + 11304298-11304400,11304731-11305797,11306026-113064... 29 2.1
06_03_0105 + 16693771-16693780,16693833-16693876,16694274-166943... 29 2.8
11_06_0743 + 26847652-26849424 29 3.7
08_01_0409 + 3625071-3625228,3625829-3625905,3626310-3626889,362... 29 3.7
05_04_0364 + 20658219-20658416,20658475-20658543 29 3.7
04_03_0498 + 16574250-16574312,16576576-16577457,16578624-165787... 29 3.7
06_03_1056 + 27239176-27242361 28 4.8
12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798 28 6.4
03_02_0296 + 7191455-7191615,7192031-7192071,7192156-7192741,719... 28 6.4
09_01_0039 - 687711-688607,692336-693113,693414-693501,693761-69... 27 8.5
02_05_0686 - 30900748-30902167,30903442-30904742 27 8.5
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497... 27 8.5
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 27 8.5
>10_08_0425 -
17806117-17806401,17806862-17806984,17807076-17807222,
17807307-17807450,17808557-17808668,17808762-17808898,
17809016-17809156,17810921-17811004,17811275-17811742,
17811858-17811936,17812494-17812506,17813884-17814460,
17814502-17814774,17814899-17815045,17815354-17815413,
17816124-17816510
Length = 1058
Score = 31.1 bits (67), Expect = 0.69
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Frame = +2
Query: 287 SSVRATTRESKYPTGSPSCPWTTATLPVTSETAASKLLPSARGRSLSVALQTSPGLSTRP 466
S+ R+ TR P SP +T P ++ TA S S++V + T+P L TRP
Sbjct: 295 STSRSDTRS--VPEASPQT-MQLSTGPPSTSTAGSP--------SITVQMPTNPSLPTRP 343
Query: 467 KSVVAYGYSDNSDDSKISSVSLAKTAYTMEPGTN-YPQT 580
+ A G S S I S + M P + +PQT
Sbjct: 344 EVFGAIGASVPGQPSTILSAPPSLLGRPMTPSASPFPQT 382
>09_06_0001 +
20114108-20115686,20115813-20115928,20116416-20117394,
20118820-20119082
Length = 978
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 380 TAASKLLPSARGRSLSVALQTSPGLSTRPKSVVAYGYSDNSDDSKISSVSL 532
T ASK + R SV+L + P T+P++VV Y DNSD+ IS +
Sbjct: 75 TFASKQKAFLQSRP-SVSLDSRP--RTKPQNVVYATYEDNSDEPSISDFDI 122
>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
Length = 1275
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 380 TAASKLLPSARGRSLSVALQTSPGLSTRPKSVVAYGYSDNSDDSKISSVSL 532
T ASK + R SV+L + P T+P++VV Y DNSD+ IS +
Sbjct: 224 TFASKQKAFLQSRP-SVSLDSRP--RTKPQNVVYATYEDNSDEPSISDFDI 271
>03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012
Length = 890
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 380 TAASKLLPSARGRSLSVALQTSPGLSTRPKSVVAYGYSDNSDDSKISSVSL 532
T ASK + R SV+L + P T+P++VV Y DNSD+ IS +
Sbjct: 75 TFASKQKAFLQSRP-SVSLDSRP--RTKPQNVVYATYEDNSDEPSISDFDI 122
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 380 TAASKLLPSARGRSLSVALQTSPGLSTRPKSVVAYGYSDNSDDSKISSVSL 532
T ASK + R SV+L + P T+P++VV Y DNSD+ IS +
Sbjct: 75 TFASKQKAFLQSRP-SVSLDSRP--RTKPQNVVYATYEDNSDEPSISDFDI 122
>01_01_1116 +
8839946-8840048,8840142-8842064,8842192-8842307,
8843340-8843763,8845187-8845452
Length = 943
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 380 TAASKLLPSARGRSLSVALQTSPGLSTRPKSVVAYGYSDNSDDSKISSVSL 532
T ASK + R SV+L + P T+P++VV Y DNSD+ IS +
Sbjct: 224 TFASKQKAFLQSRP-SVSLDSRP--RTKPQNVVYATYEDNSDEPSISDFDI 271
>10_05_0054 -
8611989-8612309,8612350-8612566,8613047-8613284,
8613633-8613843,8613924-8614048,8615849-8615968,
8617245-8618076
Length = 687
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 471 DF-GRVDNPGDVCSATLSDRPRADGNSFDAAVSDVTGSVA 355
DF R DN + + +DR AD FDA V+D+ G++A
Sbjct: 135 DFTARPDNTEVLIGSPSADRITADAGHFDALVADLAGALA 174
>02_02_0536 +
11304298-11304400,11304731-11305797,11306026-11306416,
11307164-11308041
Length = 812
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 425 SVALQTSPGLSTRPKSVVAYGYSDNSDDSKISSVSL 532
SV+L + P T+P++VV Y DNSD+ IS +
Sbjct: 159 SVSLDSRP--RTKPQNVVYATYEDNSDEPSISDFDI 192
>06_03_0105 +
16693771-16693780,16693833-16693876,16694274-16694348,
16694548-16694784,16694880-16695050,16695137-16695250
Length = 216
Score = 29.1 bits (62), Expect = 2.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 370 NWKCRCRPRTRRGSCWVF 317
N+ CRCRP RR W +
Sbjct: 5 NYVCRCRPENRRNKGWAY 22
>11_06_0743 + 26847652-26849424
Length = 590
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 284 RSSVRATTRESKYPTGSPSCPWTTATLPVTSETAAS 391
R S R R P+ S S PW LP + TAA+
Sbjct: 305 RCSPRCRRRARAPPSSSTSPPWPEPALPAAARTAAA 340
>08_01_0409 +
3625071-3625228,3625829-3625905,3626310-3626889,
3626974-3627111,3627318-3627387,3627449-3627933,
3628681-3628890,3629259-3629326,3629855-3629961,
3630275-3630346,3630448-3630614,3630709-3630820,
3631464-3631650,3632174-3632286
Length = 847
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 254 LGATM*TNSLRSSVRATTRESKYPTGSPSCPWTTATLP 367
LG NS + +A R +KYP P PW +T+P
Sbjct: 398 LGGIAGKNS-NTEFQAPCRSTKYPREIPQLPWYRSTIP 434
>05_04_0364 + 20658219-20658416,20658475-20658543
Length = 88
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +2
Query: 344 PWTTATLPVTSETAASKLLPSARGRSLSVALQTSPGLSTRPKS 472
P +T LPV +++ SAR L L PG S RP S
Sbjct: 10 PDSTCRLPVMKSRHPTRIAQSARPTQLPETLTLQPGRSGRPVS 52
>04_03_0498 +
16574250-16574312,16576576-16577457,16578624-16578714,
16578802-16578857,16579527-16579640
Length = 401
Score = 28.7 bits (61), Expect = 3.7
Identities = 26/79 (32%), Positives = 40/79 (50%)
Frame = +2
Query: 227 TNLDKIRGFLGATM*TNSLRSSVRATTRESKYPTGSPSCPWTTATLPVTSETAASKLLPS 406
T+LD +RG G + R + + T RE+ YPT +P T A + + +K
Sbjct: 272 TSLD-VRGCEGTPRASLKRRVNKKRTKREASYPT-TPLNGNTGALVVIEPPLTRTK---- 325
Query: 407 ARGRSLSVALQTSPGLSTR 463
A+G++LS+A S STR
Sbjct: 326 AKGKALSLATPESLKRSTR 344
>06_03_1056 + 27239176-27242361
Length = 1061
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 208 VIDLVYQPSVDRDLHEVVHTEVGYW 134
V D + S+DR LH HTE G W
Sbjct: 814 VFDFMPNYSLDRWLHRAKHTETGKW 838
>12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798
Length = 333
Score = 27.9 bits (59), Expect = 6.4
Identities = 21/82 (25%), Positives = 35/82 (42%)
Frame = +2
Query: 257 GATM*TNSLRSSVRATTRESKYPTGSPSCPWTTATLPVTSETAASKLLPSARGRSLSVAL 436
GAT + SL ++ ++ PT SP P T ++ AS S+ + AL
Sbjct: 173 GATSKSRSLTTTTTTIVHDTSTPTSSPPLPPLMDT--TLAQLQASMNTSSSSAIAAVAAL 230
Query: 437 QTSPGLSTRPKSVVAYGYSDNS 502
+ P S+ S+ + + NS
Sbjct: 231 EQVPCFSSFSNSIASNNNNSNS 252
>03_02_0296 +
7191455-7191615,7192031-7192071,7192156-7192741,
7193307-7193444,7193572-7193728,7193848-7194332,
7194867-7195086
Length = 595
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 254 LGATM*TNSLRSSVRATTRESKYPTGSPSCPWTTATLP 367
LG NS ++ +A R +KYP P PW T+P
Sbjct: 418 LGGIAGKNS-KTEFQAPCRTTKYPREIPPLPWYRQTIP 454
>09_01_0039 -
687711-688607,692336-693113,693414-693501,693761-694148,
694176-694401,694527-694680,695073-695145
Length = 867
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -1
Query: 512 WSRQNCQNIRR--QRPTSDALTILATSAAQRLV 420
WSR+ C+N+ R ++ + ++AT+A RL+
Sbjct: 388 WSRKKCKNVGREIEKGRKELAELIATNADSRLI 420
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 335 PSCPWTTATLPVTSETAASKLLPSARGRSLSVALQTSPGLS--TRPKSVVA 481
PS P TA V + + P+AR S S +L PG +RP+S+ A
Sbjct: 255 PSTPAITAVSSVPRSSPSPAPAPAARPASPSPSLPLPPGRESPSRPQSIAA 305
>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
18449864-18449959,18452287-18452447,18452669-18452790,
18452872-18453239,18453653-18453739,18453835-18453969,
18454349-18454471,18454771-18454854,18455023-18455187,
18455310-18455486,18455660-18455773,18455912-18456016,
18457056-18457174,18457244-18457385,18457461-18457555,
18457757-18457862,18458125-18458204,18458285-18458461,
18459828-18459912,18460024-18460104,18460208-18460351,
18460468-18460563,18460654-18460854,18461462-18461895,
18462417-18462478,18462622-18462872,18462956-18463030,
18463110-18463300,18463696-18463867,18463956-18464020,
18464646-18464778,18464861-18464962,18465047-18465130,
18465656-18465730,18465818-18465877,18465967-18466223,
18466560-18466608,18466781-18466941,18467013-18467079,
18467174-18467299,18467422-18467592,18468566-18468769,
18469059-18469165,18469608-18469737,18469774-18469959,
18470704-18470742
Length = 2202
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -2
Query: 355 CRPRTRRGSCWVFAFPRCG-PY*RAQ 281
CR T +G W A P+CG PY R Q
Sbjct: 2096 CRDSTLQGQEWRCAVPQCGQPYHREQ 2121
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = -1
Query: 590 WVF-KSAGSSYPAP*YKPFLPSSRSRFWSRQNCQNIRRQ 477
W F + G P P P P RSR+W+ + RQ
Sbjct: 28 WPFGRGGGDGEPPPPLPPMEPPKRSRWWAHELAAERARQ 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,109,960
Number of Sequences: 37544
Number of extensions: 339620
Number of successful extensions: 1010
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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