Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00313
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.32 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.2  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.0  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   6.8  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   9.0  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 223 FSFSPVIDLVYQPSVDRDLHEVVHTEV 143
           FSF     LVY+PS  R  HE+  T+V
Sbjct: 507 FSFHQWGILVYEPSACRPRHEIRSTDV 533


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +2

Query: 140 PYFGMYH-LVKIPIDRGLVHQVDYWGEGKVTNLDKI-RGFLGATM*TNSLRSS 292
           P +  +H L++IP D    +++D W     + L+KI R  L      N L  S
Sbjct: 522 PKYDSHHKLIEIPEDLKYFYEIDNWMLDLNSGLNKITRNSLDCFFTMNDLEPS 574


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +2

Query: 140 PYFGMYH-LVKIPIDRGLVHQVDYWGEGKVTNLDKI-RGFLGATM*TNSLRSS 292
           P +  +H L++IP D    +++D W     + L+KI R  L      N L  S
Sbjct: 522 PKYDSHHKLIEIPEDLKYFYEIDNWMLDLNSGLNKITRNSLDCFFTMNDLEPS 574


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -2

Query: 184 SVDRDLHEVVHTEVGYWGVRIQQVLICVVVWLRGG 80
           S+DR +H       G W  R   V    VVWL  G
Sbjct: 120 SLDRYIHIKDPLRYGRWVTRRIAVAGIAVVWLLAG 154


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +2

Query: 353 TATLPVTSETAASKLLPSARGRSLSVALQTSPGLSTRP 466
           T TLP  S T      PSA   + +     + G +T P
Sbjct: 225 TTTLPAASATGTGPATPSAVVATSNATAAMTTGTTTIP 262


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 234 LTR*EASSELQCERTVCARQ*GPQRGKAN 320
           LT  E  + L  E++VC  + G  + KAN
Sbjct: 17  LTIEELKTRLHTEQSVCKTETGIDQQKAN 45


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 265 NVNEQFALVSKGHNEGKQIP 324
           N+++  A V + + EGK+IP
Sbjct: 241 NISQVIACVGQQNVEGKRIP 260


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,583
Number of Sequences: 438
Number of extensions: 3019
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)