Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00313
(590 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19680.1 68414.m02453 expressed protein 33 0.14
At3g15690.2 68416.m01989 biotin carboxyl carrier protein of acet... 31 0.76
At1g52670.1 68414.m05947 biotin/lipoyl attachment domain-contain... 29 1.8
At5g28970.1 68418.m03584 Ulp1 protease family protein contains P... 28 5.4
At4g19310.1 68417.m02846 Ulp1 protease family protein similar to... 28 5.4
At1g79600.1 68414.m09281 ABC1 family protein contains Pfam domai... 28 5.4
At1g35110.1 68414.m04352 Ulp1 protease family protein similar to... 28 5.4
At5g20440.1 68418.m02430 mob1/phocein family protein contains Pf... 27 7.1
At5g47455.6 68418.m05857 expressed protein 27 9.4
At5g47455.5 68418.m05855 expressed protein 27 9.4
At5g47455.4 68418.m05860 expressed protein 27 9.4
At5g47455.3 68418.m05859 expressed protein 27 9.4
At5g47455.2 68418.m05858 expressed protein 27 9.4
At5g47455.1 68418.m05856 expressed protein 27 9.4
>At1g19680.1 68414.m02453 expressed protein
Length = 444
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 130 LPNTLLRYVPPREDPDRQRAGTPSRLLGRRKSD*P*QDKRLPRSYNVNE 276
LP+ +PPR P R+ G+P + L R+ SD + P +Y+ +E
Sbjct: 148 LPSAHTHSLPPRSTPSRRARGSPGQQLFRQVSDSQTLGLKSPNNYSTSE 196
>At3g15690.2 68416.m01989 biotin carboxyl carrier protein of
acetyl-CoA carboxylase-related contains weak similarity
to Biotin carboxyl carrier protein of acetyl-CoA
carboxylase, chloroplast precursor (BCCP)
(Swiss-Prot:Q42533) [Arabidopsis thaliana]
Length = 263
Score = 30.7 bits (66), Expect = 0.76
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -3
Query: 378 SDVTGSVAVVHGHDGDPVGY---LLSLVVALTDERKL 277
SDVTG V + DG+PVGY L+S++ + +KL
Sbjct: 226 SDVTGEVVKILREDGEPVGYNDALISILPSFPGIKKL 262
>At1g52670.1 68414.m05947 biotin/lipoyl attachment domain-containing
protein similar to SP|Q06881 Biotin carboxyl carrier
protein of acetyl-CoA carboxylase (BCCP) {Anabaena sp.};
contains Pfam profile PF00364: Biotin-requiring enzyme
Length = 274
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 378 SDVTGSVAVVHGHDGDPVGYLLSLVVAL 295
SDV+G + + DG+PVGY +L+ L
Sbjct: 237 SDVSGEIVKILREDGEPVGYNDALITVL 264
>At5g28970.1 68418.m03584 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1172
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -2
Query: 259 SEEASYLVKVSHFSFSPVIDLVYQPSVDRDLHEV-VHTEVGYWGVRI 122
SE+ +K S + ID +Y P + D H V + +G W V I
Sbjct: 914 SEDMQRFIKGSKTEWFKDIDTIYAPMIWNDCHWVGLSINLGIWSVEI 960
>At4g19310.1 68417.m02846 Ulp1 protease family protein similar to
At5g36030, At1g35110; contains Pfam profile PF02902:
Ulp1 protease family, C-terminal catalytic domain
Length = 389
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -2
Query: 259 SEEASYLVKVSHFSFSPVIDLVYQPSVDRDLHEV-VHTEVGYWGVRI 122
SE+ +K S + ID +Y P + D H V + +G W V I
Sbjct: 227 SEDMQRFIKGSKTEWFKDIDTIYAPMIWNDCHWVGLSINLGIWSVEI 273
>At1g79600.1 68414.m09281 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 711
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2
Query: 368 VTSETAASKLLPSARGRSLSVALQTSPGLSTRPKSVVAYGYSDNSDDSKISSVSLAK 538
V A L AR + A SP S+RP SVV Y +D +DD + + +L +
Sbjct: 35 VNRRRLARAALVQARPKEDGAAASPSP--SSRPASVVQYRRADLADDLQAEARALGR 89
>At1g35110.1 68414.m04352 Ulp1 protease family protein similar to
At5g28170, At1g44880, At3g42530, At4g19320, At5g36020,
At4g03970, At3g43010, At2g10350 ; contains Pfam profile
PF02902: Ulp1 protease family, C-terminal catalytic
domain
Length = 1311
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -2
Query: 259 SEEASYLVKVSHFSFSPVIDLVYQPSVDRDLHEV-VHTEVGYWGVRI 122
SE+ +K S + ID +Y P + D H V + +G W V I
Sbjct: 1175 SEDMQRFIKGSKTEWFKDIDTIYAPMIWNDCHWVGLSINLGIWSVEI 1221
>At5g20440.1 68418.m02430 mob1/phocein family protein contains Pfam
profile: PF03637 mob1/phocein family
Length = 217
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +1
Query: 136 NTLLRYVPP--REDPDRQRAGTPSR-LLGRRKSD*P*QDKRLPRSYNVNEQFAL 288
N ++R VP R+ P+ + G+ R L+ +SD + RLP+ ++NE FA+
Sbjct: 11 NNVVRTVPSKKRKHPEYKSKGSQIRELISGIRSDNLREAVRLPQGVDINEWFAM 64
>At5g47455.6 68418.m05857 expressed protein
Length = 100
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 275 NSLRSSVRATTRESKYPTGSPSCPWTTATLPVTSETAASKL 397
+S +S++R++ R S TGS ++A + S+ AAS L
Sbjct: 12 SSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPL 52
>At5g47455.5 68418.m05855 expressed protein
Length = 108
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 275 NSLRSSVRATTRESKYPTGSPSCPWTTATLPVTSETAASKL 397
+S +S++R++ R S TGS ++A + S+ AAS L
Sbjct: 12 SSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPL 52
>At5g47455.4 68418.m05860 expressed protein
Length = 116
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 275 NSLRSSVRATTRESKYPTGSPSCPWTTATLPVTSETAASKL 397
+S +S++R++ R S TGS ++A + S+ AAS L
Sbjct: 12 SSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPL 52
>At5g47455.3 68418.m05859 expressed protein
Length = 106
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 275 NSLRSSVRATTRESKYPTGSPSCPWTTATLPVTSETAASKL 397
+S +S++R++ R S TGS ++A + S+ AAS L
Sbjct: 12 SSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPL 52
>At5g47455.2 68418.m05858 expressed protein
Length = 104
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 275 NSLRSSVRATTRESKYPTGSPSCPWTTATLPVTSETAASKL 397
+S +S++R++ R S TGS ++A + S+ AAS L
Sbjct: 12 SSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPL 52
>At5g47455.1 68418.m05856 expressed protein
Length = 100
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 275 NSLRSSVRATTRESKYPTGSPSCPWTTATLPVTSETAASKL 397
+S +S++R++ R S TGS ++A + S+ AAS L
Sbjct: 12 SSFKSAIRSSFRNSPIGTGSSPAAASSAGFRIPSKPAASPL 52
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,590,811
Number of Sequences: 28952
Number of extensions: 260495
Number of successful extensions: 788
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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