Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00312
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   4.6  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    26   4.6  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    25   6.1  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    25   6.1  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   6.1  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    25   8.0  

>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 168  DKSLHQLRTAMHHHPPNQERAVNLSILPV 82
            D +LH     + +H  + E A NLSILP+
Sbjct: 1061 DDNLHHGEIYLRNHILSDEMANNLSILPI 1089


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 134 TTTHRIKKELLICQSFRCPGLVRFPVLSQIKP 39
           T   R+ K  +     RCP ++R+P L  IKP
Sbjct: 375 TAPSRLSKGFITEGGIRCPAIIRYPPL--IKP 404


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 99  LSILPVSGPGEISRVESN*AAGSTPGGALPLV 4
           +SIL V+GP +  R+  +   G T  G L L+
Sbjct: 214 VSILKVTGPSQFERIGGSSLGGGTLWGLLSLL 245


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 229 CAASCRATHDDVLKFFLEGPA 291
           CA+SC +T D+   FF+ G A
Sbjct: 255 CASSCPSTPDEQKNFFIVGNA 275


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 120 SVGGGAWPFLVGGAICLVNSGNERDSSLLNRRRYLGV 230
           ++  G    L  G + ++N G E D  L N  RYL V
Sbjct: 44  NIDAGTMSPLEHGEVFVLNDGGEVDLDLGNYERYLNV 80


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 481 LLGIPRLWGIIANPNPQHEGVSAGCPGL*ARENM 380
           L G+P ++G++  P    EG++    G    EN+
Sbjct: 292 LYGVPSMYGVVTLPYSVREGINIFLDGHIPTENL 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,545
Number of Sequences: 5004
Number of extensions: 47116
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)