Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00312
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402...    29   3.5  
07_01_0130 - 963856-965454                                             28   4.7  
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928...    28   4.7  
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260...    28   6.2  
05_03_0357 - 12916142-12916368,12916540-12916594                       27   8.2  

>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
            42640431-42640607,42640853-42641617,42641697-42641791,
            42641889-42641951,42642047-42642135,42642229-42642324,
            42642457-42643104,42643596-42643628,42643838-42643912,
            42644442-42644603,42644604-42644674,42644758-42644815,
            42645196-42645394,42645487-42645552,42645699-42646183
          Length = 1310

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 469  PRLWGIIANPNPQHEGVSAGCPGL*ARENML 377
            P LW +++ P P+++ +  G PG   R  +L
Sbjct: 1110 PFLWNVLSAPLPKNDAIDGGLPGSADRPKLL 1140


>07_01_0130 - 963856-965454
          Length = 532

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 156 HQLRTAMHHHPPNQERAVNLSILPVSGPGEISR 58
           H +   +   PPN     NL +LP+ GP ++ +
Sbjct: 195 HIINFLLRPEPPNTLSVDNLGVLPIIGPAKVGK 227


>02_05_1011 +
           33487670-33487958,33490794-33492100,33492541-33492853,
           33493190-33494247
          Length = 988

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 402 PGQPAETPSCWGLGFAIIPHKRGIPSKR 485
           PG+P +TP  W +  + +P +  +P+KR
Sbjct: 443 PGEPRDTPRGWTVSPSGLPLRVSVPTKR 470


>02_01_0362 +
           2607097-2607371,2607766-2608612,2608842-2608910,
           2609968-2610202,2610454-2610536,2610924-2611046,
           2611326-2611379
          Length = 561

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 443 PQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTS 339
           PQ P    F GLP  +G  +H D  ++A   P  S
Sbjct: 278 PQKPVENFFKGLPYAVGD-QHGDWIAIAHQHPLLS 311


>05_03_0357 - 12916142-12916368,12916540-12916594
          Length = 93

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +1

Query: 370 KESACSPWPRGPGNPLKLLRAGDWGLQLSPINEEFLVSASHKLALISPCPLYTP 531
           K SA +P PR PG  L+  +   W L+   +     +S +H   +    PL  P
Sbjct: 35  KGSATAPSPRSPGLELRAPKTPFWSLRDIHLRTSGFLSKAHGKRIKGMGPLNQP 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,737,428
Number of Sequences: 37544
Number of extensions: 399368
Number of successful extensions: 987
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)