Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00312
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23517-11|AAY44017.1|  288|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical p...    28   5.5  
U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical p...    27   7.3  
AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical ...    27   7.3  
AC024791-31|AAF60655.1|  181|Caenorhabditis elegans Hypothetical...    27   7.3  

>U23517-11|AAY44017.1|  288|Caenorhabditis elegans Hypothetical
           protein D1022.9 protein.
          Length = 288

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 24  QEWSLRLNLTQHGKSHQARTPEGLTD*QLFLD 119
           Q W L L    H K + ARTP  + D ++F++
Sbjct: 59  QYWPLMLARFSHEKPYVARTPAAIADAEMFIN 90


>Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical
           protein Y69H2.14 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
 Frame = -3

Query: 455 DNCKPQSPARRSFSGLPGPLGQ----GE--HADSFSVA 360
           ++C+  +PAR+   G PGP GQ    GE  H+D+ S A
Sbjct: 190 NDCQTCAPARQGAPGPPGPAGQPGQPGEPGHSDTSSTA 227


>U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical
           protein R144.2a protein.
          Length = 823

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 21  HQEWSLRLNLTQHGKSHQARTP 86
           H +W ++ NL +HG ++ A  P
Sbjct: 696 HMDWHVKQNLARHGSNNSAAVP 717


>AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical
           protein Y39E4B.1 protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 481 LLGIPRLWGIIANPNPQHEGVSAGCPGL*ARENM 380
           L G+P ++G++  P+   EG++    G    ENM
Sbjct: 300 LYGVPGVYGVVTLPSGVREGINMFLEGFIRTENM 333


>AC024791-31|AAF60655.1|  181|Caenorhabditis elegans Hypothetical
           protein Y47G6A.3 protein.
          Length = 181

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 32  EPAA*FDSTREISPGPDTGRIDRL 103
           EP+A FD+  ++ PG    RIDR+
Sbjct: 100 EPSALFDNANDLLPGQKEERIDRM 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,794,586
Number of Sequences: 27780
Number of extensions: 295399
Number of successful extensions: 765
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)