Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00312
         (580 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38360.2 68417.m05424 expressed protein contains Pfam profile...    31   0.56 
At2g21140.1 68415.m02508 hydroxyproline-rich glycoprotein family...    28   3.7  
At4g10210.1 68417.m01674 hypothetical protein IB1C3-1 protein, A...    28   3.9  
At3g13784.1 68416.m01741 beta-fructosidase, putative / beta-fruc...    28   5.2  

>At4g38360.2 68417.m05424 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 485

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 455 DNCKPQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTSKGIT 327
           D+C   SP+RR   G+  PL  G  +DS      + R   G T
Sbjct: 415 DSCMSSSPSRRVIRGIDDPLLNGSFSDSGVTRTKKHRRKSGYT 457


>At2g21140.1 68415.m02508 hydroxyproline-rich glycoprotein family
           protein identical to proline-rich protein 2 [Arabidopsis
           thaliana] gi|7620011|gb|AAF64549
          Length = 321

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 490 HKLALISPCPLYTPPVVLPIE*FSEVFGP 576
           HK     P P+Y PPVV+P + F  +  P
Sbjct: 239 HKPIYKPPVPIYKPPVVIPKKTFPPLHKP 267



 Score = 25.0 bits (52), Expect(2) = 3.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 511 PCPLYTPPVVLP 546
           P P+Y PPVV+P
Sbjct: 219 PVPIYKPPVVIP 230



 Score = 21.8 bits (44), Expect(2) = 3.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 487 SHKLALISPCPLYTPPV 537
           +HK     P P+Y PPV
Sbjct: 204 AHKPIYKPPVPIYKPPV 220


>At4g10210.1 68417.m01674 hypothetical protein IB1C3-1 protein,
           Arabidopsis thaliana, AJ011845 contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 375

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -3

Query: 485 ALTRNSSFMGDNCKPQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTSKGI 330
           AL +  SF GDN  PQS   +++   P     G H       + +PR   G+
Sbjct: 141 ALLKMKSFDGDNSNPQSSWSKTYK--PTSSNGGHHFAVVRTTKGKPRRYNGV 190


>At3g13784.1 68416.m01741 beta-fructosidase, putative /
           beta-fructofuranosidase, putative / cell wall invertase,
           putative similar to beta-fructofuranosidase GI:402740
           from [Arabidopsis thaliana]
          Length = 569

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 324 VCDALRCPGPHARYTEGISMFSL--A*RPGQPAETPSCWGLGFAIIPHKRGI 473
           V D  +    HA  T+ I+  +L  A RP +P++   CW     I+P+ + +
Sbjct: 77  VMDVNKTVWGHATSTDLINWITLSPAIRPSRPSDINGCWSGSVTILPNGKPV 128


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,180,821
Number of Sequences: 28952
Number of extensions: 280688
Number of successful extensions: 619
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)