Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00311
         (741 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5DHF7 Cluster: Putative uncharacterized protein; n=1; ...    35   2.4  
UniRef50_UPI0000F21E3C Cluster: PREDICTED: hypothetical protein;...    33   7.4  
UniRef50_Q9MTD3 Cluster: DNA-directed RNA polymerase subunit bet...    33   9.7  

>UniRef50_A5DHF7 Cluster: Putative uncharacterized protein; n=1;
           Pichia guilliermondii|Rep: Putative uncharacterized
           protein - Pichia guilliermondii (Yeast) (Candida
           guilliermondii)
          Length = 158

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 24/64 (37%), Positives = 31/64 (48%)
 Frame = -1

Query: 279 ALPVDASFHRFPTSVTWKATRYNLNVLSTNKHNDYVTTT*NKMEMSLVLFK*FFNQFCYS 100
           AL  D  F  F  S TWK       +  T KH+  +TTT NK+ +SLV      N+  Y 
Sbjct: 42  ALVFDCKFKNF--SKTWKFLNEVAILAHTMKHHPTITTTYNKVHLSLVTHD-AGNKITYK 98

Query: 99  RVKI 88
            VK+
Sbjct: 99  DVKL 102


>UniRef50_UPI0000F21E3C Cluster: PREDICTED: hypothetical protein;
           n=2; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 178

 Score = 33.1 bits (72), Expect = 7.4
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -2

Query: 629 RSMHVSRTKCHCHFSSAVKRKLYKISVATFKNRHIIYLAN*ARAC 495
           +S  ++RT+  C FS  V  +LY ++V+T+  +H   ++   R C
Sbjct: 133 QSQKLNRTQSDCAFSDLVPGRLYNLTVSTWSGQHYSAVSIYGRTC 177


>UniRef50_Q9MTD3 Cluster: DNA-directed RNA polymerase subunit beta;
           n=9; Sarcocystidae|Rep: DNA-directed RNA polymerase
           subunit beta - Toxoplasma gondii
          Length = 1051

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -2

Query: 689 VTSSLKSLNYYKFNVASLLYRSMHVSRTKCHCHFSSAVKRKLYKISVATFKNRHIIYLAN 510
           V S  K +  YK  +  + + S+  ++TK   +F +++ ++LY I       R I YL N
Sbjct: 405 VVSFAKHIRIYKKGIIQVYFSSIFKNKTKEFLNFKTSLDQELYLIQFNNINLRKIKYLMN 464


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 674,866,595
Number of Sequences: 1657284
Number of extensions: 12721294
Number of successful extensions: 28877
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28869
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)