Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00311
         (741 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    23   3.4  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    22   6.0  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    22   6.0  

>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 511 IKHELVSDFTHPNHIIFAHNNI 446
           ++HE+V  F H   I+F  + I
Sbjct: 1   MQHEVVKKFLHSVRIVFVQSEI 22


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -3

Query: 730 NTFRTFIYLQTSFL 689
           +TFRT+++ +T F+
Sbjct: 125 STFRTYVFKETEFI 138


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -3

Query: 730 NTFRTFIYLQTSFL 689
           +TFRT+++ +T F+
Sbjct: 116 STFRTYVFKETEFI 129


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,651
Number of Sequences: 336
Number of extensions: 3617
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)