Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00311
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    27   2.8  
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch...    26   6.5  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    25   8.6  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   8.6  

>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = -3

Query: 601 VIVTSVQPLNENFIKSV*QLLKIVISFTWQIKHELVSDFTHPNHIIF 461
           V V+ V  L+  ++K+   ++    S T Q++   ++DFTH NHI +
Sbjct: 107 VPVSVVDELSTEYLKNFKCVVVTETSLTKQLE---INDFTHKNHIAY 150


>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 437

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 40  FLLIYRNIHMVSYLLRNFHSAVT 108
           FLL  +N H   YLLR  H  ++
Sbjct: 159 FLLTQKNYHKFKYLLRQMHELLS 181


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -3

Query: 613 RAPNVIVTSVQPLNENFIKSV*QLLKIVISFTWQIKHELVSDFTHPNHIIFAHNN 449
           + PN +  S QPL  N   S  +L     SF   ++  +  D     +  + HNN
Sbjct: 251 KIPNRLSPSTQPLLSNSRHSSFRLASSSTSFPASLEMNVDIDLEPSGYFFYRHNN 305


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 19  TDMICTWFLLIYRNIHMVSYLLRNFHSAVTKLIKKLFKKHQTHL 150
           TD I +  L+++RNI  +    +N  SAV +L  ++ K  +  L
Sbjct: 549 TDQIISSRLVVFRNIRELQQQNQNLLSAVHELADRMEKDEKPDL 592


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,099
Number of Sequences: 5004
Number of extensions: 59291
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)