Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00311
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38980| Best HMM Match : RhoGAP (HMM E-Value=0)                      31   0.98 
SB_34263| Best HMM Match : MORN (HMM E-Value=0.067)                    29   3.0  
SB_2629| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.9  
SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_17963| Best HMM Match : RVP (HMM E-Value=0.3)                       28   9.1  
SB_8116| Best HMM Match : FIVAR (HMM E-Value=8.6)                      28   9.1  

>SB_38980| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 367

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 650 NVASLLYRSMHVSRTKCHCHFSSAVKRKLYKISVATF 540
           N   + YR  H   T CHC+ SS     L + SV+TF
Sbjct: 3   NSFEISYRCRHSVPTICHCNRSSEYSCMLLRFSVSTF 39


>SB_34263| Best HMM Match : MORN (HMM E-Value=0.067)
          Length = 757

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -2

Query: 338 IFWAAPKPPCSVARRR----HSGTHSLLTLHFIGFLLQ*LGRQHDTILTFYQQINIMTML 171
           + W+  +   S ARR     H   H    LHF  FLL+   +++  + +FY  ++  T L
Sbjct: 322 VLWSTERSGASKARRYWCCLHGALHYNFDLHFHDFLLKSYLKENKIVKSFYTDVH--TAL 379

Query: 170 QQL 162
           Q++
Sbjct: 380 QRI 382


>SB_2629| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 538

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 637 YYIGLCMFRAPNVIVTSVQPLNENFIKSV*QLLKIVISFT 518
           YYIGL    + + +V  ++P+  NF +    LL  V+ FT
Sbjct: 133 YYIGLLFVWSISALVACIRPMAPNFRQMDLSLLIFVVFFT 172


>SB_55599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 988

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -2

Query: 650 NVASLLYRSM--HVSRTKCHCHFSSAVKRKLYKISVATF 540
           N+A+ L+ S+  H++ T C   F S++K  L+ +  A+F
Sbjct: 504 NIAAKLWNSLPLHITNTDCLSKFKSSLKTYLFSMLPASF 542


>SB_17963| Best HMM Match : RVP (HMM E-Value=0.3)
          Length = 338

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -2

Query: 695 IPVTSSLKSLNYYKFNVASLLYRSMHVSRTKCHC--HFSSAVKRKLYKIS 552
           IP+  +LK LN  K  ++S      +  +T C    +FSS VK++  +I+
Sbjct: 246 IPIILALKILNRTKSEISSTARSESYTGQTLCELRPNFSSIVKKREPRIA 295


>SB_8116| Best HMM Match : FIVAR (HMM E-Value=8.6)
          Length = 127

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 300 QTTSQWHALPVDASFHRFPTSVTWKATRYNLNVLSTNKHNDYVTTT 163
           Q   Q H  P+D +++   T++T   T     V+  N  N   TTT
Sbjct: 11  QRQQQHHQQPIDDNYNNIKTTITATMTTTTNKVIGNNYSNIKWTTT 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,351,997
Number of Sequences: 59808
Number of extensions: 413957
Number of successful extensions: 928
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)