Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00311
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-45|CAD31822.2|  542|Caenorhabditis elegans Hypothetical...    32   0.49 
Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical pr...    31   0.86 
Z83218-7|CAB05685.2|  283|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>AL132948-45|CAD31822.2|  542|Caenorhabditis elegans Hypothetical
           protein Y39B6A.25 protein.
          Length = 542

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 674 KSLNYYKFNVASLLYRSMHVSRTKCHCHFSSAVKRKLY 561
           + L+ Y+  V   L R  HV R+ CH H+S  +K  L+
Sbjct: 504 RQLDIYRPRVNHKLPRDNHVYRSMCHPHYSKGIKEFLW 541


>Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical protein
            C35C5.6 protein.
          Length = 1224

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 297  TTSQWHALPVDASFHRFPTSVTWKATRYNLNVLSTNKHNDYV 172
            T S WH LP D+ F R+       +T ++  ++ +N    YV
Sbjct: 965  TVSAWHVLPGDSPFSRYIVVDVTNSTEHDAELVYSNSRRMYV 1006


>Z83218-7|CAB05685.2|  283|Caenorhabditis elegans Hypothetical
           protein C31A11.3 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -2

Query: 710 LFTNVIPVTSSLKSLNYYKFNVASLLYRSMHVSR 609
           L+  +IP+ SS+ SL YYKF + +    S+ +SR
Sbjct: 31  LYLKLIPIKSSM-SLIYYKFGIDAFYTFSICISR 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,255,352
Number of Sequences: 27780
Number of extensions: 330037
Number of successful extensions: 772
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)