Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00311
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.2  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = -2

Query: 710 LFTNVIPVTSSLKSLNYYKFNVASLLYRSMHVSRTKCHCH 591
           L+T    +T   K+ N YK       Y ++      C CH
Sbjct: 443 LYTAFDVLTDPKKNPNVYKVETVGDKYMAVSGLPEPCRCH 482


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = -2

Query: 710 LFTNVIPVTSSLKSLNYYKFNVASLLYRSMHVSRTKCHCH 591
           L+T    +T   K+ N YK       Y ++      C CH
Sbjct: 443 LYTAFDVLTDPKKNPNVYKVETVGDKYMAVSGLPEPCRCH 482


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 608 TKCHCHFSSAVKRKLYKISVATFKN 534
           T C  +FS+ +   LY +  A ++N
Sbjct: 301 TGCLYYFSTTINPILYNVMSAKYRN 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,546
Number of Sequences: 438
Number of extensions: 4117
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)