Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00311
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33070.1 68414.m04079 hypothetical protein                          32   0.46 
At1g17520.1 68414.m02153 DNA-binding protein, putative contains ...    28   5.7  
At1g67140.1 68414.m07638 expressed protein                             28   7.5  

>At1g33070.1 68414.m04079 hypothetical protein
          Length = 165

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = -3

Query: 610 APNVIVTSVQPLNENFIKSV*QLLKIVISFTWQIKHELVSDFTHPNHIIFAHNNIPTY 437
           AP  +  +  P+++N  + +   + I +S+  Q +HE+  +F H  HI+F + N   Y
Sbjct: 83  APLPVAGADLPMDQNQYEPIQLYIPIGLSYHIQYQHEIYDNFKHA-HILFMNGNYYNY 139


>At1g17520.1 68414.m02153 DNA-binding protein, putative contains
           similarity to DNA-binding protein PcMYB1 [Petroselinum
           crispum] gi|2224899|gb|AAB61699
          Length = 296

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -2

Query: 683 SSLKSL-NYYKFNVASLLYRSMHVSRTK 603
           S LKS  N+YK N  SL+ R+ HV+R K
Sbjct: 187 SHLKSTQNFYKMNDNSLVQRTPHVARPK 214


>At1g67140.1 68414.m07638 expressed protein
          Length = 2158

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +2

Query: 197  DKTLRLYRVAFQVTEVGNL*NEASTGSACHCDVVWPRNMA 316
            DKTLR YR      E  +L  EA    A H D++  RN+A
Sbjct: 1098 DKTLR-YRTRVFAAECLSLLPEAVGNDAAHFDILLARNLA 1136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,826,105
Number of Sequences: 28952
Number of extensions: 285909
Number of successful extensions: 617
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)