Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00310
(742 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0) 122 4e-28
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32) 73 3e-13
SB_218| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07) 44 2e-04
SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0) 38 0.006
SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0) 37 0.015
SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27) 37 0.020
SB_6126| Best HMM Match : Thioredoxin (HMM E-Value=0.021) 36 0.026
SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0) 36 0.034
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0) 35 0.060
SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06) 35 0.080
SB_21263| Best HMM Match : Thioredoxin (HMM E-Value=0.00093) 34 0.14
SB_43665| Best HMM Match : Thioredoxin (HMM E-Value=0.019) 33 0.24
SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05) 32 0.42
SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.56
SB_38445| Best HMM Match : ERp29 (HMM E-Value=2.2e-19) 31 1.3
SB_13486| Best HMM Match : DUF1530 (HMM E-Value=2.3) 29 3.0
SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0) 29 3.0
SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_46010| Best HMM Match : RNase_PH (HMM E-Value=3.00004e-41) 28 6.9
SB_18286| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21) 28 6.9
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13) 28 9.1
SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)
Length = 308
Score = 122 bits (293), Expect = 4e-28
Identities = 59/142 (41%), Positives = 90/142 (63%)
Frame = +3
Query: 198 PFFRAATSKVSESSISQSRVDRCADTASAQGVSAMPTFIFYRNRTKIDRLEGGNTTVLEN 377
P + + K ++ + VD C + A+ QGV+AMPTF F++N+ K+D + G + LE+
Sbjct: 47 PVYSGLSEKYKQAVFLKIDVDVCQELAAKQGVTAMPTFQFFKNKVKVDEVRGADPKALED 106
Query: 378 KVRQYYGSDVAEEDEDNTVAGHMDLITFITKSECECLNEADDHPLPKH*QMTGDTLASYC 557
++++ G D E+ V GH+DL ++I KS CECLNE ++HPL L S C
Sbjct: 107 AIKKWIG-DGEEDGAGCGVKGHVDLNSYINKSGCECLNEDNEHPLNDALTKGPGFLQSDC 165
Query: 558 DEQLIINISFNQLVKLHSIKIK 623
DEQL+I++SFNQ VKLHS+K++
Sbjct: 166 DEQLLISLSFNQPVKLHSMKLQ 187
Score = 73.7 bits (173), Expect = 1e-13
Identities = 31/59 (52%), Positives = 42/59 (71%)
Frame = +1
Query: 79 GLATVIQNDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKVE 255
G V++ D+ F E+ NAGTKLVV DFTA+WC PC+ IAP + L K+ +AVFLK++
Sbjct: 7 GNVKVLELDSQFTAELTNAGTKLVVADFTASWCGPCKSIAPVYSGLSEKYKQAVFLKID 65
Score = 37.9 bits (84), Expect = 0.009
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +2
Query: 614 KDQGPAD-KGPKSIKLFINQPRTLDFDQAAGYSQCKT 721
K Q P D + PK +KLFINQ ++LDFD A + +T
Sbjct: 185 KLQAPNDGQAPKVVKLFINQTKSLDFDSAENFQAIQT 221
>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
Length = 456
Score = 72.5 bits (170), Expect = 3e-13
Identities = 31/59 (52%), Positives = 41/59 (69%)
Frame = +1
Query: 79 GLATVIQNDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKVE 255
G V+++D+ F E+ AG++LVV+DFTATWC PC+ IAP F L KF VFLKV+
Sbjct: 8 GNVIVVEDDSFFSVEIERAGSRLVVIDFTATWCGPCKSIAPVFTNLSMKFMDVVFLKVD 66
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/64 (40%), Positives = 37/64 (57%)
Frame = +3
Query: 198 PFFRAATSKVSESSISQSRVDRCADTASAQGVSAMPTFIFYRNRTKIDRLEGGNTTVLEN 377
P F + K + + VD+C TA + G+ AMPTF FY N+ KID L G + LEN
Sbjct: 48 PVFTNLSMKFMDVVFLKVDVDQCQLTAESCGIRAMPTFHFYHNKAKIDELRGADPGALEN 107
Query: 378 KVRQ 389
K+++
Sbjct: 108 KIKE 111
>SB_218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +1
Query: 94 IQNDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLP-AKFPRAVFLKVE*TDAP 270
I+ A F + + N KLVV+DF A WC PC++I P F+++ +F F K++ +
Sbjct: 15 IEERAEFNSVINNTKDKLVVIDFYAEWCGPCRQIKPKFKKMALEEFKDVFFAKIDVDELE 74
Query: 271 IQRVLRAS 294
+++++ A+
Sbjct: 75 LEKLVGAN 82
>SB_44457| Best HMM Match : Thioredoxin (HMM E-Value=2.2e-07)
Length = 438
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = +1
Query: 142 KLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKVE*TDAPIQRVLR 288
++ +DFTATWC PC+ I P FE++ +F KV+ D VLR
Sbjct: 12 EVAAIDFTATWCGPCRMIGPKFEEMAKEFKGVKCAKVD-VDVNSVEVLR 59
>SB_56064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/39 (48%), Positives = 23/39 (58%)
Frame = +1
Query: 100 NDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQL 216
N +F T++ A VVDF A WC PC R AP +EQL
Sbjct: 439 NSKNFFTDVL-ASEDAWVVDFYAPWCGPCMRFAPKYEQL 476
Score = 35.1 bits (77), Expect = 0.060
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 154 VDFTATWCPPCQRIAPFFEQLPAKF 228
VDF A WCPPC R+ P + + F
Sbjct: 307 VDFFAPWCPPCMRLLPEYRKAARSF 331
>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 536
Score = 38.3 bits (85), Expect = 0.006
Identities = 23/67 (34%), Positives = 33/67 (49%)
Frame = +1
Query: 121 EMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKVE*TDAPIQRVLRASVQ 300
E+A K V V+F A WC C+++AP ++QL K+ + V D+ V V
Sbjct: 396 EVARNKDKNVFVEFYAPWCGHCKQLAPIWDQLGEKYKDHADIVVAKMDSTANEVEGVKV- 454
Query: 301 CPHSFST 321
HSF T
Sbjct: 455 --HSFPT 459
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 127 ANAGTKLVVVDFTATWCPPCQRIAP 201
A A K V+V+F A WC C+ +AP
Sbjct: 37 AVAANKHVLVEFYAPWCGHCKALAP 61
>SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 295
Score = 37.1 bits (82), Expect = 0.015
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +1
Query: 121 EMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKVE*TDAPIQRVL 285
E+ N G K +V+F A WC C+++AP +EQL + ++ + + DA R L
Sbjct: 34 EVVN-GEKFALVEFYAPWCGHCKQLAPTYEQLGEAYTQSSDVIIAKVDADGDRDL 87
>SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27)
Length = 472
Score = 36.7 bits (81), Expect = 0.020
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1
Query: 100 NDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFE----QLPAKFPRAVFLKV 252
ND +F + + V+VDF A WC CQR++P F+ QL P F KV
Sbjct: 57 NDQNFNETIKK--NEYVLVDFYAPWCSDCQRLSPLFDTAALQLRDNNPSLRFAKV 109
Score = 31.5 bits (68), Expect = 0.74
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +1
Query: 100 NDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQL 216
+D++F E A K V+VDF A WC C+++AP ++ +
Sbjct: 140 DDSNF--EPAVQKHKFVLVDFYAPWCFHCKKMAPDYKDV 176
>SB_6126| Best HMM Match : Thioredoxin (HMM E-Value=0.021)
Length = 293
Score = 36.3 bits (80), Expect = 0.026
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 142 KLVVVDFTATWCPPCQRIAPFFE 210
K+V + F+A+WCPPCQ+ P +
Sbjct: 155 KVVAIYFSASWCPPCQKFTPLLK 177
>SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 362
Score = 35.9 bits (79), Expect = 0.034
Identities = 22/66 (33%), Positives = 34/66 (51%)
Frame = +1
Query: 103 DAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKVE*TDAPIQRV 282
D +F+ E+ N+ L +V+F A WC CQR+AP + + + V KV DA + V
Sbjct: 86 DTNFEKEVLNS-KDLWLVEFFAPWCGHCQRLAPEWAKAATELKGKV--KVGALDATVHTV 142
Query: 283 LRASVQ 300
+ Q
Sbjct: 143 TASRYQ 148
>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
Length = 1056
Score = 35.1 bits (77), Expect = 0.060
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Frame = +1
Query: 103 DAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFF----EQLPAKFPRAVFLKVE*TDA 267
D++F++ +A G +++V+F A WC C+R+AP + E L P KV+ T+A
Sbjct: 545 DSNFKSGVA--GKDIMLVEFFAPWCGHCKRLAPEYETAAEALKKNDPPVPLAKVDCTEA 601
>SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06)
Length = 70
Score = 34.7 bits (76), Expect = 0.080
Identities = 14/36 (38%), Positives = 26/36 (72%)
Frame = +1
Query: 103 DAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFE 210
D++F++ +A G +++V+F A WC C+R+AP +E
Sbjct: 20 DSNFKSGVA--GKDIMLVEFFAPWCGHCKRLAPEYE 53
>SB_21263| Best HMM Match : Thioredoxin (HMM E-Value=0.00093)
Length = 148
Score = 33.9 bits (74), Expect = 0.14
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 4/29 (13%)
Frame = +1
Query: 142 KLVVVDFTATWCPPCQRIAP----FFEQL 216
K++ V F+A WCPPC++ P F+E+L
Sbjct: 26 KVIAVYFSAHWCPPCRQFTPILKDFYEEL 54
>SB_43665| Best HMM Match : Thioredoxin (HMM E-Value=0.019)
Length = 415
Score = 33.1 bits (72), Expect = 0.24
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +1
Query: 121 EMANAGT---KLVVVDFTATWCPPCQRIAP 201
E+ NAG K+V + F+A WCPPC+ P
Sbjct: 164 EVINAGDLKGKIVGIYFSAHWCPPCRAFTP 193
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 91 VIQNDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAP 201
++ E + K+V + F+A WCPPC+ P
Sbjct: 13 LVGKHGQISVESLSGEGKIVGLYFSAHWCPPCRGFTP 49
>SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05)
Length = 215
Score = 32.3 bits (70), Expect = 0.42
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 112 FQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLK 249
F ++++ L VV F A W P C ++ E+L + P F+K
Sbjct: 12 FDRILSSSSNVLAVVHFFAPWAPHCNQMNDVLEELAKENPHVNFIK 57
>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 645
Score = 31.9 bits (69), Expect = 0.56
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = +1
Query: 118 TEMANAGTKLVVVDFTATWCPPCQRIAPFFEQ 213
TE+ N + L++V+F A WC C+++AP +E+
Sbjct: 187 TEVVNRES-LMLVEFFAPWCGHCKQLAPEYEK 217
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +1
Query: 145 LVVVDFTATWCPPCQRIAPFFEQLPAKF----PRAVFLKVE*TDA 267
+++V+F A WC C+ +AP + + K P F K++ T A
Sbjct: 80 IILVEFYAPWCGHCKSLAPEYAKAAKKMKLNDPPVPFAKMDATVA 124
>SB_38445| Best HMM Match : ERp29 (HMM E-Value=2.2e-19)
Length = 335
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 136 GTKLVVVDFTATWCPPCQRIAPFFEQLPAKF 228
G+K V + F A W CQRI F+Q+ +F
Sbjct: 42 GSKFVFIFFYAPWDDHCQRILQIFDQVADEF 72
>SB_13486| Best HMM Match : DUF1530 (HMM E-Value=2.3)
Length = 222
Score = 29.5 bits (63), Expect = 3.0
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 142 KLVVVDFTATWCPPCQ 189
K+ ++DF A+WC PC+
Sbjct: 178 KVTIIDFWASWCQPCR 193
>SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 612
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 135 WNQVSRCGLYSNLVSTVPKDCPF 203
W GLYS LV+TV +D PF
Sbjct: 475 WTNEGGRGLYSGLVATVARDAPF 497
>SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +1
Query: 145 LVVVDFTATWCPPCQRIAPFFE----QLPAKFPRAVFLKVE*TDAPIQRVL 285
+++VDF A WC CQ + P E L AK F KV+ TD P +VL
Sbjct: 39 IMLVDFYAPWCHHCQELLPQLEGAANALAAK-GLFQFAKVDCTD-PRSKVL 87
>SB_30496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 29.1 bits (62), Expect = 4.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 142 KLVVVDFTATWCPPCQRIAPFFEQ 213
++++VDF A WC C + P +E+
Sbjct: 40 EVMLVDFYAPWCSDCDNLRPKYEK 63
>SB_46010| Best HMM Match : RNase_PH (HMM E-Value=3.00004e-41)
Length = 376
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 171 LVSTVPKDCPFFRAATSKVSESSISQSRVDRCADT 275
L + +P DCP+ S+V ES+ S S C+ T
Sbjct: 292 LKNMIPADCPYTVRVVSEVLESNGSSSMATVCSGT 326
>SB_18286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1339
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/64 (26%), Positives = 25/64 (39%)
Frame = +3
Query: 186 PKDCPFFRAATSKVSESSISQSRVDRCADTASAQGVSAMPTFIFYRNRTKIDRLEGGNTT 365
P CP+ ++ VS + Q + C T + VS + T YR + R
Sbjct: 874 PSPCPYAKSGPYSVSTTPPVQKQAPMCTGTNTTNSVSPVCTPSAYRTAKQNSRKRMNIAP 933
Query: 366 VLEN 377
LEN
Sbjct: 934 SLEN 937
>SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21)
Length = 186
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 154 VDFTATWCPPCQRIAPFFEQLPAKF 228
V F A WC C ++AP +E+L F
Sbjct: 111 VKFYAPWCIHCIKLAPIWERLAEDF 135
>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
Length = 3035
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Frame = -3
Query: 320 VENECGHCTDALSTRCIGASVYSTLRNTALGNF----AGSCSKKGAILWHGGHQVAVKST 153
+ +EC C+D L T C T + +F AG S G + VAV +T
Sbjct: 725 IHDECSECSDTLPTACTSTMRCLRYSGTGVADFYTICAGQSSDSGGLKVISQTPVAVNNT 784
>SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1726
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -3
Query: 329 PVSVENECGHCTDALSTRCIGASVYSTLRNTALGNFAGSCSKKG 198
P +V C CT I S+ T RNTA + A + SK+G
Sbjct: 1001 PKTVPWSCVACTFVNDPSMIECSICFTARNTASDDVADTSSKQG 1044
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,665,715
Number of Sequences: 59808
Number of extensions: 408266
Number of successful extensions: 987
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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