Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00309
         (782 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2G7G8 Cluster: LMBR1-like conserved region family prot...    35   2.6  
UniRef50_Q6F135 Cluster: Putative uncharacterized protein; n=1; ...    33   6.1  

>UniRef50_A2G7G8 Cluster: LMBR1-like conserved region family
           protein; n=1; Trichomonas vaginalis G3|Rep: LMBR1-like
           conserved region family protein - Trichomonas vaginalis
           G3
          Length = 481

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = -1

Query: 143 YVIYFFLGIFITLPIREALVSCYKKKSRRDVCTHKTRRMST 21
           Y IY FLGIF+ + +   L+SC +KK R D  +   + +ST
Sbjct: 435 YAIYVFLGIFV-IALAVKLISCSRKKGRDDRNSEIRKALST 474


>UniRef50_Q6F135 Cluster: Putative uncharacterized protein; n=1;
            Mesoplasma florum|Rep: Putative uncharacterized protein -
            Mesoplasma florum (Acholeplasma florum)
          Length = 1259

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 30/113 (26%), Positives = 51/113 (45%)
 Frame = -3

Query: 735  DTSSPTS*NRCTRRISLIIVGTAVLTSSNSFSQGDVTSSSEIVSKLRGPTDDEVLSDILK 556
            D+S+ T  N   RR+ LI   ++V     +F   + T   E    L   TDD  L    K
Sbjct: 829  DSSNLTDKNEILRRLKLITGLSSVTEQDFNFKINNSTLEKEGKITLTA-TDDSKLLQNNK 887

Query: 555  TLSIERIKERSTTDT*GHFVTLDF*FLDNTSLLS*YPFVNHNVWGRNVDTSYM 397
             +++ +I   + TD     +  DF F ++T+      ++ +     NVD+SY+
Sbjct: 888  EINVPKILNLNETD-----LFKDFIFYEDTNTYDIMSYLQNQKHWTNVDSSYI 935


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 737,462,545
Number of Sequences: 1657284
Number of extensions: 13974075
Number of successful extensions: 38328
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38288
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66262109095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)