Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00309
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    29   0.75 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    29   0.99 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.7  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    27   3.0  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    27   3.0  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   3.0  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   3.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.0  
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa...    26   7.0  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   7.0  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   9.3  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    25   9.3  

>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -2

Query: 361 EINSRNDFKLVFLFKCNNLLKFSQQQYHRMLDATTHTV-CMRSQCQFDFT 215
           +IN   D K VFL + +++++F +     + ++  H + C RSQ  F ++
Sbjct: 301 DINVSPDKKSVFLSEEDSIIEFIKNSLQNLCESCGHAISCSRSQSIFSYS 350


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 376 YWMFREINSRNDFKLVFLFKCNNLLKFSQQQYHRM 272
           +WM  E+ S N   +V  F C+NL K    Q  R+
Sbjct: 684 FWMSNEVTSVNCTGIVLSFCCDNLAKIGSGQSTRV 718


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 20/74 (27%), Positives = 32/74 (43%)
 Frame = -3

Query: 732 TSSPTS*NRCTRRISLIIVGTAVLTSSNSFSQGDVTSSSEIVSKLRGPTDDEVLSDILKT 553
           TS+P +   CT   S++   T + TS NS S      S    + + G +  +V S    +
Sbjct: 582 TSTPVTTTNCTTSTSVLYTSTPI-TSPNSTSSSSTQVSWNSTTPITGTSTSKVTSS--TS 638

Query: 552 LSIERIKERSTTDT 511
           + +      STT T
Sbjct: 639 IPLTSTNRTSTTFT 652


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = -3

Query: 666 VLTSSNSFSQGDVTSSSEIVSKLRGPTDDEVLSDILKTLSIERIKERSTTDT*GHFVTLD 487
           ++   N+F + ++    + + + RGP  D    D+ K L  E IK+ S+  +      L+
Sbjct: 22  IIGGQNNFLENNLQQIFQKIIQERGPFRDLKEEDLQKELQKESIKDESSAKSSETENVLE 81

Query: 486 F*FLDN 469
           F  LD+
Sbjct: 82  FATLDS 87


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
 Frame = -1

Query: 248  LHAVAMSIRFHNLAHV--LLFKIKAPTKKKRFIN*IRYVIYFFLGIFITLPI 99
            ++A+  S++F  L ++  L+ K+      +  +  ++Y++  FLGIFI LP+
Sbjct: 1017 MYAIHASVKFLKLDYLRSLMNKLNLKIVMRSLVMALKYLLLAFLGIFI-LPL 1067


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 650 TVSPRVTSRPPPKSSRNFGDRPTMRSCQTS 561
           ++S R   +PPP  S N    P +RSC +S
Sbjct: 28  SLSRRNWKKPPPFPSTNASYAPVIRSCDSS 57


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 672 TAVLTSSNSFSQGDVTSSSEIVSKLRGPTDDEVLSD 565
           TA+   SN+   GD  +SS  +SK    T D  L+D
Sbjct: 84  TALSAQSNTAQDGDQLASSSTISKDHSETLDNKLND 119


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = -3

Query: 762 SKSTTRGCVDTSSPTS*NRCTRRISLIIVGTAVLTSSNSFSQGDVTSSSEIVSKLRGPTD 583
           S S++     TSS  S +  +       + ++ ++SS+SFS    +SSS I S    P+ 
Sbjct: 293 SSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSS 352

Query: 582 DEVLS 568
               S
Sbjct: 353 SSFSS 357


>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 614 SEEDVTSPWEKLLDDVNTAVPTIIK 688
           +EEDVTS W K  + +N    ++IK
Sbjct: 7   AEEDVTSMWVKFHESLNPIRSSLIK 31


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 25/81 (30%), Positives = 31/81 (38%)
 Frame = -3

Query: 762 SKSTTRGCVDTSSPTS*NRCTRRISLIIVGTAVLTSSNSFSQGDVTSSSEIVSKLRGPTD 583
           S S+T     TSSP+S +      S I+      TSS   S   + S S   S L     
Sbjct: 598 STSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSS--SILSSSIS 655

Query: 582 DEVLSDILKTLSIERIKERST 520
              +S  L T S   I   ST
Sbjct: 656 TIPISSSLSTYSSSVIPSSST 676


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 575  TSSSVGPRSFETI-SEEDVTSPWEKLLDDVNTAVPTIIKLMRRVQRFQEVGEEVST 739
            T   + P+S+  I S  ++T+P  ++LD +     T + +  R +   + G  VST
Sbjct: 1371 TIGGLNPKSYRLITSPSNLTNPTRRILDGMLIDYFTYMSVAHRHEMAHKCGVPVST 1426


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 775 STCSL*VHDSGVRRHLLPHFLKSL 704
           STC+   H S ++  +LPH++KS+
Sbjct: 130 STCT---HGSSLQHQVLPHYIKSM 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,145,014
Number of Sequences: 5004
Number of extensions: 63015
Number of successful extensions: 209
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)