Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00309
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0198 + 1429396-1430640                                           31   1.4  
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953...    29   4.2  
03_01_0325 + 2529875-2529922,2530181-2530279,2530958-2531055,253...    29   4.2  
06_01_0817 - 6185881-6187074                                           29   5.5  
10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306     28   7.3  
03_06_0532 - 34562151-34562225,34562958-34563161                       28   7.3  

>05_01_0198 + 1429396-1430640
          Length = 414

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/74 (27%), Positives = 31/74 (41%)
 Frame = +2

Query: 524 LRSFILSMLSVFKMSDKTSSSVGPRSFETISEEDVTSPWEKLLDDVNTAVPTIIKLMRRV 703
           LR   LS   +F  +   +++ GPR      EE+    W KL DD        +K    V
Sbjct: 21  LRRIDLSRHPLFYPTPAAAAAAGPRDLRVQREEEYEFQWPKLNDDDERRRKKKMKRHEAV 80

Query: 704 QRFQEVGEEVSTHP 745
           +  +++   VS  P
Sbjct: 81  ETLRQLPSIVSMAP 94


>11_03_0066 +
           9529969-9530166,9530271-9530450,9530559-9531287,
           9531554-9531706,9531803-9532238,9532322-9532501,
           9532643-9532889,9533090-9533123,9533385-9533489,
           9533833-9533967,9534220-9534399,9534504-9534626
          Length = 899

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = -3

Query: 624 SSSEIVSKLR-GPTDDEVLSDILKTLSIERIKERSTTDT*GHFVTLDF*FLDNTSLLS*Y 448
           SSS I+ +++ G TDD  +  IL  L  + +   S+TD  G+ V +    L+    ++ Y
Sbjct: 280 SSSSILDRIKMGGTDDFTMQCILMILFSKLLAPDSSTDITGNIVNMVSKNLEQYKDMALY 339

Query: 447 PF-VNHNVW 424
            F V+H  W
Sbjct: 340 KFVVDHLRW 348


>03_01_0325 +
           2529875-2529922,2530181-2530279,2530958-2531055,
           2531945-2532031,2532652-2532684,2532813-2532890,
           2533059-2533183,2533267-2533349,2533436-2533527,
           2533611-2533680,2533760-2533829,2533919-2534073
          Length = 345

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 611 ISEEDVTSPWEKLLDDVNTAVPTIIKLMRRVQRFQEVGEE 730
           +SEE+   P ++L DD+  A+P I   + R+Q  Q   ++
Sbjct: 290 LSEENDMDPMQRLWDDIERAIPHIGTQVPRMQLLQHPADK 329


>06_01_0817 - 6185881-6187074
          Length = 397

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 641 PRVTSRPPPKSSRNFGDRPTMRSC 570
           P  TS PPP S+ + G  P  RSC
Sbjct: 11  PSATSCPPPGSAAHAGHAPLCRSC 34


>10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306
          Length = 387

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 596 RSFETISEEDVTSPWEKLLDDVNTAVPTIIKLMRRVQRFQEVGEEVSTHP 745
           ++F  I+ E V     KL+DD  T V    K +  ++ + E G+E+   P
Sbjct: 117 KAFSEIAAERVLDEMVKLIDDPQTVVNNRNKALMLIEAWGESGDELRYLP 166


>03_06_0532 - 34562151-34562225,34562958-34563161
          Length = 92

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = -2

Query: 373 WMFREINSRNDFKLVFLFKCNNLLKFSQQQYHRMLDATTHTVCMRSQCQF 224
           W F    S   F +    +C+N LK   Q +H  + A+ H +C      F
Sbjct: 40  WAFLSDMSPRKFVIFLAGRCSNQLKMKLQGWHAQMMASCH-ICSADASNF 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,702,189
Number of Sequences: 37544
Number of extensions: 372882
Number of successful extensions: 1101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)