Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00309
         (782 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52869| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_58666| Best HMM Match : Vps16_C (HMM E-Value=6.4e-37)               28   7.4  
SB_38016| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)              28   7.4  
SB_37613| Best HMM Match : zf-B_box (HMM E-Value=2.7e-07)              28   7.4  
SB_54574| Best HMM Match : WD40 (HMM E-Value=0)                        28   9.8  

>SB_52869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 549

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = -2

Query: 391 IIKNYYWMFREINSRNDFKLVFLFKCNNLLKFSQQ 287
           +I  Y    ++++ + DF  +F+  CN+ +KF+++
Sbjct: 201 VISEYEKKNKQLDCKEDFLSIFIANCNSCVKFAER 235


>SB_58666| Best HMM Match : Vps16_C (HMM E-Value=6.4e-37)
          Length = 259

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = -2

Query: 394 PIIKNYYWMFREINSRNDFKLVFLFKCN--NLLKFS-QQQYHRMLDATTHTVCMRSQCQF 224
           P+  N Y  F + N+ ND + ++L +    +L   S ++  ++ LD  +   C+ S  + 
Sbjct: 20  PVALNLYMKFCKENNPNDLESIYLMQSQFMDLANMSVRKSINKELDVESKMDCL-SDAKM 78

Query: 223 DFTI*HMFFYLKLKHQQKK 167
           ++T      Y K+  +Q K
Sbjct: 79  NYTKAGNVIYTKITEEQMK 97


>SB_38016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 159 YKLNTLRNLFLFRHIYNVTDTRSTGFLL*KKIAAGCLHAQDAANV 25
           Y  N+L+   L  H Y+ T T  T F++   + + C HA  A  V
Sbjct: 92  YNENSLQVRTLIAHTYSTTSTTRTRFVVGDPLESTCRHASLALAV 136


>SB_22201| Best HMM Match : zf-C3HC4 (HMM E-Value=8.1e-10)
          Length = 604

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = -2

Query: 391 IIKNYYWMFREINSRNDFKLVFLFKCNNLLKFSQQ 287
           +I +Y    ++++   DF  +F+  CN+ +KF+++
Sbjct: 264 VISDYEKRNKQLDCHEDFLSIFIANCNSCVKFAER 298


>SB_37613| Best HMM Match : zf-B_box (HMM E-Value=2.7e-07)
          Length = 533

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = -2

Query: 391 IIKNYYWMFREINSRNDFKLVFLFKCNNLLKFSQQ 287
           +I +Y    ++++   DF  +F+  CN+ +KF+++
Sbjct: 188 VISDYEKRNKQLDCHEDFLSIFIANCNSCVKFAER 222


>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 1050

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 630 VTSSSEIVSKLRGPTDDEVLSDILKTL-SIERIKERSTTDT*GHFVT 493
           +TS S +VSKL+     +V+SD +    SI+  +E    D   HFV+
Sbjct: 396 ITSLSWVVSKLKVTGPSDVISDYISVRDSIKAEQELEVLDNFHHFVS 442


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,515,125
Number of Sequences: 59808
Number of extensions: 451598
Number of successful extensions: 2670
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2669
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)