Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00309
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.6  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    22   5.6  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    22   5.6  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    22   5.6  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   5.6  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    22   5.6  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    22   5.6  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    22   5.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.4  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   9.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 659 HHPTVSPRVTSRPPPKSSRN 600
           HH  V+ ++ S  PPKSS +
Sbjct: 342 HHLHVAKQMASPEPPKSSES 361


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 206 VLNCEIELTLRPHANSVCSRVQHSV 280
           VL+C ++    PH   +CS +  S+
Sbjct: 129 VLSCAMKFESYPHDTQICSMMIESL 153


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 468 TSLLS*YPFVNHNVWGRNVDTSYMDL 391
           +SL + Y + N+N +  N +T+Y  L
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNTNYKKL 108


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 468 TSLLS*YPFVNHNVWGRNVDTSYMDL 391
           +SL + Y + N+N +  N +T+Y  L
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNTNYKKL 108


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 468 TSLLS*YPFVNHNVWGRNVDTSYMDL 391
           +SL + Y + N+N +  N +T+Y  L
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNTNYKKL 108


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 468 TSLLS*YPFVNHNVWGRNVDTSYMDL 391
           +SL + Y + N+N +  N +T+Y  L
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNTNYKKL 108


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 468 TSLLS*YPFVNHNVWGRNVDTSYMDL 391
           +SL + Y + N+N +  N +T+Y  L
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNTNYKKL 108


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 468 TSLLS*YPFVNHNVWGRNVDTSYMDL 391
           +SL + Y + N+N +  N +T+Y  L
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNTNYKKL 108


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 468 TSLLS*YPFVNHNVWGRNVDTSYMDL 391
           +SL + Y + N+N +  N +T+Y  L
Sbjct: 83  SSLSNNYKYSNYNNYNNNYNTNYKKL 108


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 403 IYGPIIKNYYWMFREINSRNDFKLVFL 323
           +Y  ++ NY  + R +++ ND  +V L
Sbjct: 24  LYDDLLSNYNRLIRPVSNNNDTVVVKL 50


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 745 GVRRHLLPHFLK 710
           G R+  LPHF+K
Sbjct: 262 GFRKRTLPHFIK 273


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 177 NKKKTIYKLNTLRNLFLFRHIYN 109
           ++K+ I K N     FLF  +YN
Sbjct: 659 DRKQVILKCNIQDMSFLFSQLYN 681


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 177 NKKKTIYKLNTLRNLFLFRHIYN 109
           ++K+ I K N     FLF  +YN
Sbjct: 749 DRKQVILKCNIQDMSFLFSQLYN 771


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,827
Number of Sequences: 438
Number of extensions: 4301
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)