Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00309
         (782 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11390.1 68417.m01837 DC1 domain-containing protein contains ...    29   3.5  
At1g33320.1 68414.m04121 cystathionine gamma-synthase, chloropla...    29   3.5  
At5g50170.1 68418.m06213 C2 domain-containing protein / GRAM dom...    28   8.0  

>At4g11390.1 68417.m01837 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 514

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 231 HCDRMQTVCVVASNIL*YCCCENFSKLLHLKR 326
           + DRMQ VC+       YCC  + +K+L LKR
Sbjct: 474 YADRMQLVCMYCK----YCCYASTNKVLTLKR 501


>At1g33320.1 68414.m04121 cystathionine gamma-synthase, chloroplast,
           putative / O-succinylhomoserine (Thiol)-lyase, putative
           strong similarity to SP|P55217 Cystathionine
           gamma-synthase, chloroplast precursor (EC 4.2.99.9)
           (CGS) (O-succinylhomoserine (Thiol)-lyase) {Arabidopsis
           thaliana}; contains Pfam profile PF01053: Cys/Met
           metabolism PLP-dependent enzyme
          Length = 412

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -3

Query: 741 CVDTSSPTS*NRCTRRISLIIV---GTAVLTSSNSFSQGDVTSSSEIVSKLR 595
           C+D +  T  N+ T  +   +V    T  +   N F  G ++ S E+VSK+R
Sbjct: 202 CIDATIATPINQKTLALGADLVHHSATKYIGGHNDFLAGSISGSMELVSKIR 253


>At5g50170.1 68418.m06213 C2 domain-containing protein / GRAM
           domain-containing protein low similarity to SP|P40748
           Synaptotagmin III (SytIII) {Rattus norvegicus}; contains
           Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
          Length = 1027

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -3

Query: 765 RSKSTTRGCVDTSSPTS*NRCTRRISLIIVGTAVLTSSNSFSQGDVTS--SSEIVSKLRG 592
           R KS TR   DTSSP        RIS +  G  V+ S     Q D  S  S+ ++ K+R 
Sbjct: 26  RHKSKTRVARDTSSPIWNEEFVFRISDVDEGDDVVVSILHHEQQDHQSIVSTGLIGKVRI 85

Query: 591 P 589
           P
Sbjct: 86  P 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,162,374
Number of Sequences: 28952
Number of extensions: 313972
Number of successful extensions: 878
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)