Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00308
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    24   1.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.9  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   8.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.9  

>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 582 KKTGCVTFRKQYHRLYYTQTDMLPIVRVC 668
           KK  C  +RK Y+ + Y +   +P+   C
Sbjct: 97  KKLYCNNYRKLYYNINYIEQIPIPVPIYC 125


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = -2

Query: 341 LPHERVESVVN--SHACFGRCFDERNIIALRTSRARAMSTAHDCRSHLLPTSTMGTSSAS 168
           LP E  + +     H   G+ FDE  I+   + + R     ++CRS +        + ++
Sbjct: 404 LPREMRQRITEYFEHRYQGKFFDEELILGELSEKLREDVINYNCRSLVASVPFFANADSN 463

Query: 167 F 165
           F
Sbjct: 464 F 464


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = -2

Query: 341 LPHERVESVVN--SHACFGRCFDERNIIALRTSRARAMSTAHDCRSHLLPTSTMGTSSAS 168
           LP E  + +     H   G+ FDE  I+   + + R     ++CRS +        + ++
Sbjct: 372 LPREMRQRITEYFEHRYQGKFFDEELILGELSEKLREDVINYNCRSLVASVPFFANADSN 431

Query: 167 F 165
           F
Sbjct: 432 F 432


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 17  RHPGHGWPGRVFGDERPI 70
           R PG  WPG     +RPI
Sbjct: 914 RSPGRAWPGDSDIRQRPI 931


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 97  WYSPSTVLKVSKTW 138
           W +P TVL + K W
Sbjct: 181 WVTPFTVLPLLKVW 194


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 124 LLALLTANTSKNPSPVRMYWSLIAEYS 44
           ++ +L +  S NP   R+Y  L++ Y+
Sbjct: 11  IVLVLISGCSGNPDAKRLYDDLLSNYN 37


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 69  YMRTGEGFLLVFAVNSAKSFE 131
           Y+   EGF L+   NS  SF+
Sbjct: 202 YIGDNEGFALIIYNNSDNSFQ 222


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 97  WYSPSTVLKVSKTW 138
           W +P TVL + K W
Sbjct: 181 WVTPFTVLPLLKVW 194


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 354 KVSRDKKFKGKKPR 395
           K  RDKK   KKPR
Sbjct: 428 KKGRDKKSTSKKPR 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,106
Number of Sequences: 438
Number of extensions: 4728
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)