Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00307
         (746 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q847N9 Cluster: DNA adenine methyltransferase; n=1; Ast...    41   0.028
UniRef50_A7SRW7 Cluster: Predicted protein; n=2; Nematostella ve...    38   0.26 
UniRef50_Q88938 Cluster: Envelope polyprotein; n=21; Walleye der...    33   7.5  
UniRef50_A7SMU7 Cluster: Predicted protein; n=10; Nematostella v...    33   7.5  

>UniRef50_Q847N9 Cluster: DNA adenine methyltransferase; n=1; Aster
           yellows phytoplasma|Rep: DNA adenine methyltransferase -
           Aster yellows phytoplasma
          Length = 106

 Score = 41.1 bits (92), Expect = 0.028
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
 Frame = -3

Query: 516 FPKHNILTVPSIYIQECCLFVKKH-PQLYKSCGEYCQFNTRYPTKLMLPSINTRYYHTNC 340
           F K  ILT  SIYI E   F+K+H P+   S     Q+  R    L +P   T ++  + 
Sbjct: 19  FFKSKILTFSSIYILETLTFLKQHFPEFDFSTKN--QYTLRNSFNLPIPKHKTSFFKKHT 76

Query: 339 YPMTIRIFNKIPNSIRDLP-LTQFKRKL 259
             + I++FN +P S++  P L++ K+ +
Sbjct: 77  LYIGIKLFNSLPLSLKLEPSLSKLKKTI 104


>UniRef50_A7SRW7 Cluster: Predicted protein; n=2; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 439

 Score = 37.9 bits (84), Expect = 0.26
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 405 NTRYPTK--LMLPSINTRYYHTNCYPMTIRIFNKIPNSIRDLPLTQFKRKL 259
           NTRY +K  L  P+  T Y  T    M+ R + KIPN I+ LP   F  +L
Sbjct: 380 NTRYASKGNLFRPASKTNYGLTKFTAMSSRFWEKIPNCIKSLPYNSFIEQL 430


>UniRef50_Q88938 Cluster: Envelope polyprotein; n=21; Walleye dermal
            sarcoma virus|Rep: Envelope polyprotein - Walleye dermal
            sarcoma virus
          Length = 1225

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +1

Query: 70   LHIFRLFRHAKI*FIFILIITQNLLNLSIFTFYHFLF*YFIMY 198
            + +F LF+     F+ I +I Q+LL L +  F++FL  YFI Y
Sbjct: 1170 ISLFILFKVILFQFMLIPMIYQHLLLLLVLYFFYFLSLYFIFY 1212


>UniRef50_A7SMU7 Cluster: Predicted protein; n=10; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 205

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
 Frame = -1

Query: 707 LWRLTKICNLKTALQAYHGYVASNIRYCIPLWGNS--SHINRVFIAQKQCVRAMCNIHPL 534
           L R  K  +LK     YH  +   + Y   +WG++   HI+ +   QK+C R + +    
Sbjct: 112 LKRKKKFLSLKARTLFYHSLIQPILDYGAIVWGSTKKQHIDDMVKFQKRCARVILDKKWD 171

Query: 533 TSCKQFFQNI-IF*LYHPYIYKNVVCLLKSTHN 438
              K  F+ + I       IY  +V L K+ +N
Sbjct: 172 APSKPLFEELNIVPFDKRIIYLQLVLLFKAMNN 204


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 696,946,247
Number of Sequences: 1657284
Number of extensions: 13985695
Number of successful extensions: 27163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27143
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)