Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00307
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    27   2.8  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    25   8.7  

>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 495 TVPSIYIQECCLFVKKHPQLYKSCGEYCQFNTRYPTK 385
           T P  Y  +      KHP LY++     +FN RY TK
Sbjct: 173 TEPIGYSNDWFAATPKHPFLYQAIHNLSKFNHRYFTK 209


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -1

Query: 524 KQFFQNIIF*LYHPYIYKNV-VCLLKSTHNY 435
           +Q F +++F  YHP +YK+V V  LK+ + Y
Sbjct: 284 QQAFSHMVF--YHPQVYKHVGVVPLKAINAY 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,133,517
Number of Sequences: 5004
Number of extensions: 68145
Number of successful extensions: 139
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)