Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00307
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0074 - 6351819-6352073,6352601-6352648                           29   3.9  
03_05_0795 + 27783813-27785246,27785339-27785591,27786377-27786639     29   3.9  
06_03_1453 - 30258527-30258685,30259823-30260071,30260383-302604...    28   6.9  
04_04_0031 - 22289078-22289521,22289702-22289754,22289839-222900...    28   6.9  
10_03_0043 - 7327303-7327419,7327815-7327901                           28   9.1  

>05_02_0074 - 6351819-6352073,6352601-6352648
          Length = 100

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -1

Query: 737 CSKINRFSYALWRLTKICNLKTALQAYHG----YVASNIRYCIPL 615
           C + N      + L+ +C+ + AL  +      Y  SN RYCIPL
Sbjct: 47  CKRCNGLLKKAYELSMLCDAEVALIVFSSRGRLYEYSNNRYCIPL 91


>03_05_0795 + 27783813-27785246,27785339-27785591,27786377-27786639
          Length = 649

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -3

Query: 651 ICRLKYQIL-YTPLGKF*SHK*SVHCTKAMCSCHVQYSSSDFL*TIFPKHNILTVPSIYI 475
           IC L   I+ YT  G+      S H +K+      QYS  +FL +    H+  TVP ++ 
Sbjct: 487 ICGLNSHIVNYTMFGRHYGPGYSRHRSKS------QYSHVNFLASPRDLHSSQTVPILFF 540

Query: 474 QECC 463
            ECC
Sbjct: 541 AECC 544


>06_03_1453 -
           30258527-30258685,30259823-30260071,30260383-30260477,
           30260543-30260657
          Length = 205

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 440 CGCFLTNKQHSCIYMDGTVKILCFGKIVYKKSEDEYCTWHEHIAFV 577
           CG   T   +   Y DGTV + C G  ++ K  D    +HE   +V
Sbjct: 132 CGQRTTRAINPHAYTDGTVFVQCCGCNIFHKLVDNLNLFHEMKCYV 177


>04_04_0031 -
           22289078-22289521,22289702-22289754,22289839-22290092,
           22290189-22290604,22290683-22290970
          Length = 484

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 387 KLMLPSINTRYYHTNCYPMTIRIFNKIPNSIRDL 286
           KLM+ +IN  Y   + YP+T  + N+  N I  L
Sbjct: 73  KLMMAAINKNYVDMDEYPVTTELQNRCVNMIAHL 106


>10_03_0043 - 7327303-7327419,7327815-7327901
          Length = 67

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 611 GNSSHINRVFIAQKQCVRAMCNIHPLTS 528
           G++ H+N +F     CV+ M NI  LT+
Sbjct: 6   GDAKHLNGIFTLLLPCVQLMTNIQVLTA 33


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,556,681
Number of Sequences: 37544
Number of extensions: 341517
Number of successful extensions: 568
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)