Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00307
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical pr...    31   0.87 
Z36719-5|CAA85313.2|  351|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF040641-5|AAB94944.1|  379|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF016423-8|AAB65319.1|  409|Caenorhabditis elegans Hypothetical ...    28   6.1  
Z81537-4|CAB04375.2|  669|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical protein
            W09D10.2 protein.
          Length = 1335

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 115  FILIITQNLLNLSIFTFYHFLF*YFIMYNTYHLKILAHY 231
            FI   T    N+ ++TF H L    I+ NT+HL +   Y
Sbjct: 1161 FICYFTYRGSNVDMWTFGHLLVTQLIIVNTFHLALFVQY 1199


>Z36719-5|CAA85313.2|  351|Caenorhabditis elegans Hypothetical
           protein C06C3.6 protein.
          Length = 351

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 108 LNFRMPKQAKYMKLCPISCKLYFWRIKIFLSFFLVP 1
           + F  PK   ++KLC ++ K +   I +  + FL+P
Sbjct: 57  ITFHTPKSMTHLKLCLLNLKFWTLLIDLIYTVFLIP 92


>AF040641-5|AAB94944.1|  379|Caenorhabditis elegans Hypothetical
           protein D1069.4 protein.
          Length = 379

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 408 IDSTRHTIYIIVGAF*QTNNILVYIWMVQLKYYV 509
           I  T ++IY++   F +T++   YIW+V LK++V
Sbjct: 80  ITMTSYSIYLMRFRFYETDHGYSYIWLVFLKFHV 113


>AF016423-8|AAB65319.1|  409|Caenorhabditis elegans Hypothetical
           protein F40A3.7 protein.
          Length = 409

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +1

Query: 112 IFILIITQNLL-NLSIFTFYHFLF*YFIMYNTYHLKILAHY 231
           IF+ ++  N+L N S FTF ++ F +F +++  HL  LA++
Sbjct: 71  IFLFLLFPNILANYSFFTF-NWYFRWFYLHSKVHLISLANW 110


>Z81537-4|CAB04375.2|  669|Caenorhabditis elegans Hypothetical
           protein F41D3.4 protein.
          Length = 669

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = -1

Query: 746 DITCSKINRFSYALWRLTKICNLKTALQAYHGYVASNIRYCIPLWGNSSHINRVFIAQKQ 567
           +I CSK+ R    L    + C L+ + ++Y    A  I    P+  ++S I  +      
Sbjct: 210 NIGCSKLKRHYKILTDQEEKCKLQESYKSYIFLAALTIMAFFPIPLDASIIRPLVTIGTG 269

Query: 566 CVRAMCNIHPLTSCK 522
           C+   C  +P+ S K
Sbjct: 270 CLMLTCEGNPMLSNK 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,964,137
Number of Sequences: 27780
Number of extensions: 371432
Number of successful extensions: 836
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)