Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00307
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02010.1 68415.m00136 glutamate decarboxylase, putative stron...    29   3.3  
At3g17760.1 68416.m02266 glutamate decarboxylase, putative simil...    28   5.7  
At5g27280.1 68418.m03256 zinc finger (DNL type) family protein c...    28   7.6  
At5g17330.1 68418.m02030 glutamate decarboxylase 1 (GAD 1) sp|Q4...    28   7.6  

>At2g02010.1 68415.m00136 glutamate decarboxylase, putative strong
           similarity to glutamate decarboxylase isozyme 3
           [Nicotiana tabacum] GI:13752462
          Length = 493

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 387 KLMLPSINTRYYHTNCYPMTIRIFNKIPNSIRDL 286
           KLM+ SIN  Y   + YP+T  + N+  N I  L
Sbjct: 74  KLMMESINKNYVDMDEYPVTTELQNRCVNMIARL 107


>At3g17760.1 68416.m02266 glutamate decarboxylase, putative similar
           to glutamate decarboxylase GB:Q07346 [Petunia x hybrida]
           (J. Biol. Chem. 268 (26), 19610-19617 (1993))
          Length = 494

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 387 KLMLPSINTRYYHTNCYPMTIRIFNKIPNSIRDL 286
           KL++ S+N  Y   + YP+T  + N+  N I +L
Sbjct: 73  KLIMDSVNKNYVDMDEYPVTTELQNRCVNMIANL 106


>At5g27280.1 68418.m03256 zinc finger (DNL type) family protein
           contains Pfam profile PF05180: DNL zinc finger
          Length = 212

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 440 CGCFLTNKQHSCIYMDGTVKILCFGKIVYKKSEDEYCTWHE 562
           CG   T   +   Y DGTV + C G  V+ K  D    +HE
Sbjct: 130 CGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHE 170


>At5g17330.1 68418.m02030 glutamate decarboxylase 1 (GAD 1)
           sp|Q42521
          Length = 502

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 387 KLMLPSINTRYYHTNCYPMTIRIFNKIPNSIRDL 286
           KL++ SIN  Y   + YP+T  + N+  N I  L
Sbjct: 74  KLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHL 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,277,191
Number of Sequences: 28952
Number of extensions: 312984
Number of successful extensions: 554
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)