Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00306
         (549 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    27   0.082
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    23   2.3  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   2.3  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    23   2.3  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    23   2.3  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   5.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   7.1  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    21   7.1  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   7.1  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 27.5 bits (58), Expect = 0.082
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 158  DGGAPLRGYQVECNRLGSTEWIRTAPPIVL 247
            DGG P+  + +E  +  STEWI+ +  + L
Sbjct: 1516 DGGCPMLYFVIEHKKKTSTEWIQVSNNVKL 1545



 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 445 FYVTFSGIPSPTIAWFKDDY 504
           F   F G P  TI+W KD +
Sbjct: 347 FTCNFEGNPIKTISWLKDGH 366



 Score = 21.4 bits (43), Expect = 5.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 463 GIPSPTIAWFK 495
           G PSP+  W+K
Sbjct: 258 GFPSPSFRWYK 268



 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/35 (20%), Positives = 17/35 (48%)
 Frame = +1

Query: 394 FIKRLEDVTALENDKVEFYVTFSGIPSPTIAWFKD 498
           F++ +E    +    +  +  F+G P  ++ W +D
Sbjct: 513 FVRSMEKQAIVAGGTLIVHCPFAGHPVDSVVWERD 547


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 278 GSRPVSTSRAAIRLVVQCVSILLILTCYIRPDILVKALLRRASWRP 141
           G R    SRA I  V Q ++++++      P IL +     A+W P
Sbjct: 249 GKRTPLISRAKINTVKQTIAVIVMYIACSTPFILAQLW---ATWDP 291


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 290  YLCGGSRPVSTSRAAIRLVVQCVSILLILTCYIRPD-ILVKALLRR 156
            +LCG       S   I+LV++ + I+++  C I  + I + +L+ R
Sbjct: 1135 FLCGFCVYEFASDERIKLVIKAIIIMILSGCIIFTEGIWICSLIHR 1180


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 451 VTFSGIPSPTIAWF 492
           +TFSG+ SPTI  F
Sbjct: 58  MTFSGVTSPTIMKF 71


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 451 VTFSGIPSPTIAWF 492
           +TFSG+ SPTI  F
Sbjct: 58  MTFSGVTSPTIMKF 71


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 270 AC*YQSGRNTIGGAV 226
           +C Y  G+N +GG V
Sbjct: 252 SCQYYQGKNCVGGKV 266


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +1

Query: 454 TFSGIPSPTIAWFKDDYE 507
           T + +PSP   W +  +E
Sbjct: 224 TAAALPSPLYPWMRSQFE 241


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 475 PTIAWFKDDYENLVV 519
           P I WF  DY+  VV
Sbjct: 149 PLIVWFPFDYKQPVV 163


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +1

Query: 454 TFSGIPSPTIAWFKDDYE 507
           T + +PSP   W +  +E
Sbjct: 226 TAAALPSPLYPWMRSQFE 243


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,159
Number of Sequences: 336
Number of extensions: 2438
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)