Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00306
         (549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    30   0.26 
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    27   1.4  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    27   2.4  
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa...    26   4.2  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    25   7.3  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   9.7  
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    25   9.7  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    25   9.7  

>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = +3

Query: 96  IPILSDDEPNAITLKWAPRRTTEER----LYEDIRSNVTG*DQQNGYALH-HQSY 245
           +P+  D++ N I  KWAP   T E+     + ++ + + G D + G  +  H+ Y
Sbjct: 116 VPVSMDEDNNEIIRKWAPEGVTVEKKNCLSHHEVLTRLDGYDPERGVKVSGHRGY 170


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 400 KRLEDVTALENDKVEFYVTFSGIPSPTIAWFKDDYENLV 516
           KR E+   L +D  E  +T S +PSPT+   +   E++V
Sbjct: 71  KRNEEEEMLNSDASEAMLTVSSVPSPTLTENESVNESVV 109


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +3

Query: 39  KNVHWKSAGRPAPPGKPQIIPILSDDEPNAITLK 140
           KNV W       PP  P++ PI     PN   LK
Sbjct: 486 KNVQWALLRHTEPPIIPKLAPIDEKGNPNISHLK 519


>SPBC25B2.04c |||mitochondrial ribosome assembly
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 367 RSSVAGT-SGFIKRLEDVTALENDKVEFYVTFSGIPSPTIAWFKDDYENLVVG 522
           +S++ G   G  KR+ ++  L ND   + +   GI +P+I   +D  +  +VG
Sbjct: 174 KSAIVGNYPGVTKRISEIVRLFNDMDVYMLDTPGIMTPSITKPEDMLKLSLVG 226


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +2

Query: 119 AECNYIKMGATTHDGGAPLRGYQVECNRLGSTEWI 223
           AE  Y       H GG P RG+ V   R  +  W+
Sbjct: 354 AERMYYLSSVIVHVGGGPHRGHYVSIVRTKTYGWV 388


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 440 TLSFSKAVTSSKRLIKPEVPA 378
           T SF+ A+TSS  ++KP +P+
Sbjct: 225 TKSFNDALTSSSSILKPCMPS 245


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 3   ARAASHNAFKPRKNVHWKSAGRP--APPGKPQIIPILSDD 116
           AR  SH  +KPR  V  +  GRP     GK  +   LSD+
Sbjct: 472 AREESHTEWKPRFFVPDEKEGRPTLTEEGKKVLEQSLSDE 511


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
 Frame = -2

Query: 104 YWYYLWFTWWCGSSC---RFPMNVLPGL 30
           Y +Y WF W+    C    FP  ++ GL
Sbjct: 339 YQFYAWFAWYSPYLCYQASFPAPIVIGL 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,084,966
Number of Sequences: 5004
Number of extensions: 37654
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)