Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00306
         (549 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0126 - 953586-953637,953890-954554                               32   0.35 
11_01_0116 - 896184-896849                                             32   0.35 
06_03_0975 - 26471438-26472109,26472189-26472284,26472372-264724...    29   2.4  
01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165     27   7.5  
12_01_0349 + 2677347-2677424,2677548-2677631,2677717-2677821,267...    27   9.9  
08_01_0727 + 6567935-6568112,6568197-6568912,6569061-6569162,656...    27   9.9  
04_04_0597 + 26502819-26502853,26503030-26503171,26503929-265041...    27   9.9  
03_05_0276 + 22646416-22646760,22646858-22647090,22647184-226472...    27   9.9  

>12_01_0126 - 953586-953637,953890-954554
          Length = 238

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 359 VSSDRASQEPPVLLNVWRMSLL 424
           VS  +  +EPPV+L VWR SLL
Sbjct: 22  VSQQQEEEEPPVVLTVWRKSLL 43


>11_01_0116 - 896184-896849
          Length = 221

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 359 VSSDRASQEPPVLLNVWRMSLL 424
           VS  +  +EPPV+L VWR SLL
Sbjct: 22  VSQQQEEEEPPVVLTVWRKSLL 43


>06_03_0975 -
           26471438-26472109,26472189-26472284,26472372-26472482,
           26472494-26472530,26472566-26472576,26472674-26473050,
           26474310-26474895
          Length = 629

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +3

Query: 30  KPRKNVHWKSAGRPAPPGKPQIIPILSDDEPNAITLK 140
           K   NV++ S GR AP GK  I+ I  D+EP    LK
Sbjct: 578 KMNVNVNFMSVGRTAP-GKQAIMAIGVDEEPEKEALK 613


>01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165
          Length = 648

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = +1

Query: 145 RHDARRRSAFTRISGRM*QVRINRMDTHCTT---NRIAARLVLTGLEP 279
           R  A R   FT   GR   V IN      +T   N +  RLVLTG+ P
Sbjct: 448 RLPAERTHVFTTYLGRQTAVAINVFQGEGSTAKDNTLFGRLVLTGIPP 495


>12_01_0349 +
           2677347-2677424,2677548-2677631,2677717-2677821,
           2678217-2678363,2678987-2679244,2679337-2679468,
           2679550-2679570
          Length = 274

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +3

Query: 21  NAFKPRKNVHWKSAGRPAPPGKPQIIPILSDDEPNAITLKWAPRRTTEERLYEDIRS 191
           N   PRK +  K   + A P KP ++      +     +  AP R  E+ L ++ R+
Sbjct: 166 NRAMPRKRIQKKRETKAAEPSKPNLVLKSDVSKVEDQEVSTAPLRVQEQLLDDETRA 222


>08_01_0727 +
           6567935-6568112,6568197-6568912,6569061-6569162,
           6569236-6569547,6569862-6570299
          Length = 581

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = -1

Query: 423 SSDILQTFNKTGGSCDARSELTVSRLKAHCS*SDRRRSEL 304
           SS +    NK    C A   L V  L AHCS     R+ L
Sbjct: 309 SSSLFTELNKFDEGCTAIKSLAVRILAAHCSTERTMRARL 348


>04_04_0597 +
           26502819-26502853,26503030-26503171,26503929-26504186,
           26504276-26504407,26504834-26504980
          Length = 237

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +3

Query: 21  NAFKPRKNVHWKSAGRPAPPGKPQIIPILSDDEPNAITLKWAPRRTTEERLYEDIRS 191
           N   PRK +  K   + A P KP ++      +     +  AP R  E+ L ++ R+
Sbjct: 87  NRAMPRKRIQKKRETKAAEPSKPNLVLKSDVSKVEDQEVSTAPLRVQEQLLDDETRA 143


>03_05_0276 +
           22646416-22646760,22646858-22647090,22647184-22647259,
           22647383-22647459,22647559-22647592,22647699-22647848,
           22647935-22648069,22648156-22648227
          Length = 373

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 6   RAASHNAFKPRKNVHWKSAGRPAPPGKPQIIPILSDDE 119
           RAASH A +P+K         PAPP  P ++ ++ DDE
Sbjct: 64  RAASHAA-EPKK---------PAPPPAPAVVVVVDDDE 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,729,372
Number of Sequences: 37544
Number of extensions: 286186
Number of successful extensions: 717
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)