Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00306
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            28   0.054
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    28   0.072
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    28   0.072
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.67 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.2  

>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 28.3 bits (60), Expect = 0.054
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 436 KVEFYVTFSGIPSPTIAWFKDDYE 507
           K+ F+   +G P P I W KD  E
Sbjct: 39  KITFFCMATGFPRPEITWLKDGIE 62


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 27.9 bits (59), Expect = 0.072
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 412 DVTALENDKVEFYVTFSGIPSPTIAWFK 495
           DV+   N  V  +    G+P+PTI W K
Sbjct: 718 DVSVERNKHVALHCQAQGVPTPTIVWKK 745



 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 290 YLCGGSRPVSTSRAAIRLVV 231
           Y C  S P   + A IRL+V
Sbjct: 308 YRCSASNPGGEASAEIRLIV 327


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 27.9 bits (59), Expect = 0.072
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 412 DVTALENDKVEFYVTFSGIPSPTIAWFK 495
           DV+   N  V  +    G+P+PTI W K
Sbjct: 714 DVSVERNKHVALHCQAQGVPTPTIVWKK 741



 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 290 YLCGGSRPVSTSRAAIRLVV 231
           Y C  S P   + A IRL+V
Sbjct: 308 YRCSASNPGGEASAEIRLIV 327


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 415 VTALENDKVEFYVTFSGIPSPTIAWFKDDYENLVVGEP 528
           ++A   D VE     +G P P + W ++  +   + EP
Sbjct: 320 ISARVGDNVEIKCDVTGTPPPPLVWRRNGADLETLNEP 357


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 400 KRLEDVTALENDKVEFY 450
           K L+DV  L ND+++ Y
Sbjct: 128 KSLDDVKILRNDRIDSY 144


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 158  DGGAPLRGYQVECNRLGSTEW 220
            DGG P+  + VE  +    EW
Sbjct: 1486 DGGCPMIYFVVEHKKKNQQEW 1506


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,642
Number of Sequences: 438
Number of extensions: 2738
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)