Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00306
         (549 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P...    29   2.7  
At2g26790.1 68415.m03213 pentatricopeptide (PPR) repeat-containi...    29   2.7  
At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase, put...    28   4.7  
At5g63330.1 68418.m07948 DNA-binding bromodomain-containing prot...    27   6.2  
At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase fa...    27   6.2  
At3g26260.1 68416.m03276 Ulp1 protease family protein contains P...    27   8.3  

>At3g02530.1 68416.m00241 chaperonin, putative similar to
           SWISS-PROT:P80317- T-complex protein 1, zeta subunit
           (TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 535

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 99  PILSDDEPNAITLKWAPRRTTEERLYEDIRSNVT 200
           P++  DEP+   LK   R T   +LYE +   +T
Sbjct: 139 PVVMGDEPDKEILKMVARTTLRTKLYEGLADQLT 172


>At2g26790.1 68415.m03213 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 799

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 239 LVVQCVSILLILTCYIRPDILVKALLRRASWR 144
           L V CV + LIL CY + D+ ++AL +   +R
Sbjct: 349 LKVNCVIVSLILQCYCKMDMCLEALEKFKEFR 380


>At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase,
           putative / 3-PGDH, putative similar to SP:O04130 from
           [Arabidopsis thaliana]
          Length = 588

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +3

Query: 42  NVHWKSAGRPAPPGKPQIIPILSDDEPNAITLK 140
           NV + S GR AP GK  ++ I  D++P+  TLK
Sbjct: 541 NVSFMSVGRIAP-GKQAVMAIGVDEQPSKETLK 572


>At5g63330.1 68418.m07948 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 477

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 51  WKSAGRPAPPGKPQIIPILSDDE-PNAITLKWAPRRTTEERLYED 182
           WKS  +  P  KP +IP+ S     + I  + AP R  E  + ++
Sbjct: 259 WKSIEKKIPMSKPPVIPLTSSASLESEIPFEVAPMRKKEAAMNDN 303


>At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
           sapiens [SP|Q9Y2Q0, SP|O43520]; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1228

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 167 APLRGYQVECNRLGSTEWIRTAPP 238
           AP++G+  E NRL +  W+R + P
Sbjct: 507 APIKGFGFEDNRLMNGNWLRESQP 530


>At3g26260.1 68416.m03276 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 989

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 382 GTSGFIKRLEDVTALENDK-VEFYVTFSGIP 471
           GT+ F+  L+ VTA   DK ++ YVT  G P
Sbjct: 200 GTTSFLLTLKSVTARGADKLMQKYVTVQGFP 230


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,217,991
Number of Sequences: 28952
Number of extensions: 210072
Number of successful extensions: 492
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)