Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00305
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    29   0.99 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   3.0  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    27   4.0  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    27   4.0  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    26   5.3  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    26   5.3  

>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 171 KNCSFKISVFIKQMKKVFFLSLTLLDNLIFGFSNTQ 278
           +N + K   FIK MKKV  L   LL N +  FS  +
Sbjct: 855 ENMNIKEPTFIKLMKKVNILESRLLSNPLHNFSELE 890


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 163 QN*QFDIINMNVKKHPIYLIFKLLYIFVLFLLHVFIGMLSED 38
           +N  F  I   +  HP+Y IF    IFV+ +LH  + M+  D
Sbjct: 170 RNLPFSPILRQIYNHPLYNIF----IFVVIVLHAVLLMIRSD 207


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 131 VHIDNVKLSILFME-KLFV*NFCLHKTNEKGFL 226
           +HIDN K+++LF + K+FV      K N  G+L
Sbjct: 22  IHIDNSKVALLFSKSKVFVHPTSKMKDNISGYL 54


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 480 HFKIFKRLFCLLSNRFKTVTNISQNNIVL 394
           HF++ +R  CL SN + T + +SQN + L
Sbjct: 519 HFQVAERALCLWSNEYFT-SLVSQNVVTL 546


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 774 LLHNPVHLCKFTFNTTNIKVDSKLTQH 694
           L  +P +LCKFTF T      S L  H
Sbjct: 307 LTSDPTNLCKFTFPTPECAPPSLLLPH 333


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 148 DIINMNVKKHPIYLIFKLLYIFVLFLLHVFIGML 47
           D+ N  +   PIY+ F +L   +  L++++ GM+
Sbjct: 323 DVPNGYIFNKPIYIAFIILLFTLQLLIYIWFGMI 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,046,063
Number of Sequences: 5004
Number of extensions: 61881
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)