Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00305
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0137 + 12667763-12667930,12668715-12668779,12668879-126689...    31   1.4  
04_04_1264 - 32227812-32228114,32228199-32228349,32228454-322286...    28   9.6  

>09_03_0137 +
           12667763-12667930,12668715-12668779,12668879-12668954,
           12669142-12669339,12669716-12669795,12670670-12670913,
           12671061-12671162,12671243-12671305,12671550-12671627,
           12671905-12671967,12672163-12672209,12672328-12672496
          Length = 450

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 349 VVPQKENLVHVRALLLSVRELILHCVLEKPKIKLSNN 239
           V  +KEN V++ A+LL    L+LH +L+ P  +  N+
Sbjct: 59  VYREKENHVNLYAVLLRFLRLLLHTILKHPDYRTDNS 95


>04_04_1264 -
           32227812-32228114,32228199-32228349,32228454-32228691,
           32228786-32228996,32229077-32229270,32229334-32229450,
           32229580-32230522
          Length = 718

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 146 HYQYERKKASYLSDIQITLYFCIIFTACIY 57
           H   ++KK  YL  + +T+  C++   CIY
Sbjct: 316 HTSEDKKKNRYLVVVLVTIIPCLLMLTCIY 345


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,642,267
Number of Sequences: 37544
Number of extensions: 291568
Number of successful extensions: 445
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)