Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00304
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...   110   1e-25
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    26   4.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.5  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    25   9.9  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   9.9  
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    25   9.9  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   9.9  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score =  110 bits (265), Expect = 1e-25
 Identities = 49/81 (60%), Positives = 65/81 (80%)
 Frame = +3

Query: 12  SVMLALDQQSPNIAAGVHENRNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKI 191
           +V++A++QQSP+IA G+H  +  EE+GAGDQG+MFGYATDET E +PLT++LAHKLN  +
Sbjct: 92  NVLVAIEQQSPDIAQGLHYEKALEELGAGDQGIMFGYATDETPEKLPLTILLAHKLNAAM 151

Query: 192 EELRRNGEFWWARPDSKTQVT 254
              RR+G   W RPD+KTQVT
Sbjct: 152 SVARRDGSLPWLRPDTKTQVT 172



 Score = 96.3 bits (229), Expect = 3e-21
 Identities = 43/77 (55%), Positives = 54/77 (70%)
 Frame = +2

Query: 257 EYVFAGGATVPQRVHTVVVSLQHSEKITLETLRDEIREKVIKEVIPAQYLDERTVIHINP 436
           EY    GA +P+RV T+VVS QH++ I+ E LR EI EK+IK  +PA  LDE+TV HI P
Sbjct: 174 EYEEENGAVIPRRVDTIVVSAQHADSISTEDLRSEILEKIIKPTVPAHLLDEKTVYHIQP 233

Query: 437 CGLFIIGGPQSDAGPDG 487
            G F++GGPQ DAG  G
Sbjct: 234 SGRFVVGGPQGDAGLTG 250



 Score = 30.7 bits (66), Expect = 0.15
 Identities = 14/20 (70%), Positives = 14/20 (70%)
 Frame = +3

Query: 477 GLTGRKIIVDTMAGGGRTAG 536
           GLTGRKIIVDT  G G   G
Sbjct: 247 GLTGRKIIVDTYGGWGAHGG 266


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +3

Query: 150 PLTVVLAHKLNQKIEELRRNGEFWWARPDSKTQVTANMYL 269
           PL+ +L +K  +K+E + ++ +FW +R +S  Q+ A  +L
Sbjct: 183 PLSELL-NKCMEKLEIVEQDPQFWQSRIESWKQLLAKDFL 221


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -3

Query: 163 TTVNGMHSSVSSVA*PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSASITL 11
           ++ +    SVSS +       +P  TSSS+L S +  +      SS+S TL
Sbjct: 180 SSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTL 230


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +3

Query: 132 ETEECMPLTVVLAHKLNQKIEELRRNGEFWWARPDSKTQVTANMYLLVVQQSHREFIL*S 311
           E  EC  + V +      K+EE  R GE   ++   + +  AN+  L   QS     L  
Sbjct: 726 EVLECSKVRVYIVQNRIYKLEEALRQGE---SKMTVQRRNAANILHLEPIQSRTRIRLAR 782

Query: 312 CHCNTLKR 335
           C  NTLK+
Sbjct: 783 C-SNTLKK 789


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +3

Query: 132  ETEECMPLTVVLAHKLNQKIEELRRNGEFW--WARPDSKTQVTAN 260
            + +EC  L  ++   L +K  E R N E W    R   K Q TAN
Sbjct: 1099 DRQECEYLAEIVFKTLVEKEREWRENSEEWKEKMREYKKWQSTAN 1143


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 474 ASD*GPPIIKSPHGLM*ITVLSSRYCAG 391
           A D G P++ +  G +  T+   RYCAG
Sbjct: 103 AMDSGKPLVSNARGDVDGTIALLRYCAG 130


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 218  KFSISPELFNFLIEFVCKHYGQRHA 144
            +FS SPELF   IE V   YG +++
Sbjct: 1209 RFSASPELFISPIEVVSGPYGLKNS 1233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,335,034
Number of Sequences: 5004
Number of extensions: 47830
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)