Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00304
(555 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0090 - 12347165-12348349 103 1e-22
05_01_0264 + 2030080-2031270 102 2e-22
01_02_0051 - 10655867-10657057 102 2e-22
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 28 4.4
08_02_0216 + 14390739-14390847,14390983-14391017,14391112-143911... 28 5.8
08_02_0036 - 11455762-11455802,11455996-11456104,11456207-114568... 28 5.8
04_03_0847 - 20254736-20254933,20256127-20256201,20257538-202577... 28 5.8
08_01_0707 + 6249568-6249873,6250121-6250273,6251608-6251757 27 7.6
05_07_0356 + 29529422-29529517,29529613-29530200 27 7.6
04_03_0612 + 18023354-18023916,18024046-18024805 27 7.6
02_05_0924 - 32749682-32750200,32750756-32750959,32751062-327511... 27 7.6
>01_03_0090 - 12347165-12348349
Length = 394
Score = 103 bits (246), Expect = 1e-22
Identities = 50/85 (58%), Positives = 63/85 (74%), Gaps = 2/85 (2%)
Frame = +3
Query: 6 RGSVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKL 179
R V++ ++QQSP+IA GVH + + EE+GAGDQG MFGYATDET E MPL+ VLA KL
Sbjct: 91 RCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKL 150
Query: 180 NQKIEELRRNGEFWWARPDSKTQVT 254
++ E+R+NG W RPD KTQVT
Sbjct: 151 GARLTEVRKNGTCAWLRPDGKTQVT 175
Score = 94.7 bits (225), Expect = 4e-20
Identities = 41/77 (53%), Positives = 55/77 (71%)
Frame = +2
Query: 257 EYVFAGGATVPQRVHTVVVSLQHSEKITLETLRDEIREKVIKEVIPAQYLDERTVIHINP 436
EY+ GA VP RVHTV++S QH E +T + + +++E VIK VIP +YLDE+T+ H+NP
Sbjct: 177 EYLNDAGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPDKYLDEKTIFHLNP 236
Query: 437 CGLFIIGGPQSDAGPDG 487
G F+IGGP DAG G
Sbjct: 237 SGRFVIGGPHGDAGLTG 253
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +3
Query: 477 GLTGRKIIVDTMAGGGRTAG 536
GLTGRKII+DT G G G
Sbjct: 250 GLTGRKIIIDTYGGWGAHGG 269
>05_01_0264 + 2030080-2031270
Length = 396
Score = 102 bits (244), Expect = 2e-22
Identities = 49/82 (59%), Positives = 62/82 (75%), Gaps = 2/82 (2%)
Frame = +3
Query: 15 VMLALDQQSPNIAAGVHEN--RNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQK 188
V++ ++QQSP+IA GVH + + EE+GAGDQG MFGYATDET E MPL+ VLA KL +
Sbjct: 95 VLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAR 154
Query: 189 IEELRRNGEFWWARPDSKTQVT 254
+ E+R+NG W RPD KTQVT
Sbjct: 155 LTEVRKNGTCAWLRPDGKTQVT 176
Score = 95.5 bits (227), Expect = 3e-20
Identities = 42/77 (54%), Positives = 54/77 (70%)
Frame = +2
Query: 257 EYVFAGGATVPQRVHTVVVSLQHSEKITLETLRDEIREKVIKEVIPAQYLDERTVIHINP 436
EY GA VP RVHTV++S QH E +T + + +++E VIK VIP QYLDE+T+ H+NP
Sbjct: 178 EYRNESGARVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFHLNP 237
Query: 437 CGLFIIGGPQSDAGPDG 487
G F+IGGP DAG G
Sbjct: 238 SGRFVIGGPHGDAGLTG 254
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +3
Query: 477 GLTGRKIIVDTMAGGGRTAG 536
GLTGRKII+DT G G G
Sbjct: 251 GLTGRKIIIDTYGGWGAHGG 270
>01_02_0051 - 10655867-10657057
Length = 396
Score = 102 bits (244), Expect = 2e-22
Identities = 49/82 (59%), Positives = 62/82 (75%), Gaps = 2/82 (2%)
Frame = +3
Query: 15 VMLALDQQSPNIAAGVHEN--RNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQK 188
V++ ++QQSP+IA GVH + + EE+GAGDQG MFGYATDET E MPL+ VLA KL +
Sbjct: 95 VLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAR 154
Query: 189 IEELRRNGEFWWARPDSKTQVT 254
+ E+R+NG W RPD KTQVT
Sbjct: 155 LTEVRKNGACAWLRPDGKTQVT 176
Score = 95.5 bits (227), Expect = 3e-20
Identities = 42/77 (54%), Positives = 54/77 (70%)
Frame = +2
Query: 257 EYVFAGGATVPQRVHTVVVSLQHSEKITLETLRDEIREKVIKEVIPAQYLDERTVIHINP 436
EY GA VP RVHTV++S QH E +T + + +++E VIK VIP QYLDE+T+ H+NP
Sbjct: 178 EYQNDNGAMVPLRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFHLNP 237
Query: 437 CGLFIIGGPQSDAGPDG 487
G F+IGGP DAG G
Sbjct: 238 SGRFVIGGPHGDAGLTG 254
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +3
Query: 477 GLTGRKIIVDTMAGGGRTAG 536
GLTGRKII+DT G G G
Sbjct: 251 GLTGRKIIIDTYGGWGAHGG 270
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = +3
Query: 12 SVMLALDQQSPNIAAGVHENRNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKI 191
SV++A+D Q P+ A+ + E+ G G Q EC+ + +VLA + N K+
Sbjct: 2291 SVVIAVDDQDPSNASDKDAPASTEDDGNGLQS-----------ECVHVDLVLAKQDNTKV 2339
Query: 192 EELRRNGE 215
E+ +++ +
Sbjct: 2340 EDTQKSNQ 2347
>08_02_0216 +
14390739-14390847,14390983-14391017,14391112-14391153,
14391253-14391346,14391476-14391672,14392407-14392424,
14392938-14393182,14393300-14393657,14393741-14394316,
14395172-14395447
Length = 649
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 454 NYKESTWINVNYSSLIKILCRDNLFDDLF 368
N +E TW+N +YS ++K L ++ D F
Sbjct: 403 NIEEFTWLNASYSPVLKQLESQSMIDYYF 431
>08_02_0036 -
11455762-11455802,11455996-11456104,11456207-11456854,
11457422-11457491,11458563-11458624,11458729-11458803,
11459423-11459514,11460233-11461466
Length = 776
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Frame = +3
Query: 48 IAAGVHENRNDEEVGAGDQGLMFGY----ATDETEECMPLTVVLAHKLNQKIEELRRNG 212
I G H DEE AG+ GL G ++E E T+V K +K + R G
Sbjct: 130 IGLGFHGEEEDEEEEAGEAGLHLGLGFRGCSNEEVELEEATLVTPRKPKEKPKGKRNEG 188
>04_03_0847 -
20254736-20254933,20256127-20256201,20257538-20257717,
20257802-20257869,20258563-20259125,20259198-20259235
Length = 373
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 200 ELFNFLIEFVCKHYGQRHAFFC 135
E+ +FL+ +H QRHAF C
Sbjct: 87 EVIDFLLALPSRHPAQRHAFLC 108
>08_01_0707 + 6249568-6249873,6250121-6250273,6251608-6251757
Length = 202
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 158 GQRHAFFCLICCITEHQALVSCPNFLV 78
GQ+H FC CC +L S P L+
Sbjct: 75 GQQHLCFCCSCCYHRFLSLGSSPTLLL 101
>05_07_0356 + 29529422-29529517,29529613-29530200
Length = 227
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 100 SPAPTSSSFLFSCTPAAMFGDCWSSASITLPR 5
SP P+ S + SC+P A G S+S P+
Sbjct: 85 SPTPSPRSLITSCSPTAAAGSSAGSSSSISPK 116
>04_03_0612 + 18023354-18023916,18024046-18024805
Length = 440
Score = 27.5 bits (58), Expect = 7.6
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = -1
Query: 423 ITVLSSRYCAGITSLMTFSLISSRKVSRVIFSECCS 316
+T L ++C G+T + L+ ++K+ ++ CC+
Sbjct: 374 LTDLKLQHCPGLTDVGIAELVHAQKLQSLVVDGCCN 409
>02_05_0924 -
32749682-32750200,32750756-32750959,32751062-32751109,
32751769-32751819,32751907-32752032,32752117-32752257,
32752750-32752971,32753160-32753312,32753536-32753718,
32753964-32754110,32754212-32754319,32754426-32754530,
32754824-32754928,32755243-32755310,32755498-32755576,
32755876-32755935,32756023-32756076,32756168-32756233,
32756701-32756753,32757042-32757096,32757645-32757787,
32758236-32758333,32758436-32758716
Length = 1022
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 60 VHENRNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKIEELR 203
++E D EV A D ++ ++T ECM L +AH Q + L+
Sbjct: 758 LNEKSFDLEVKAADNRVIQDQLNEKTTECMELQEEVAHLKEQLYQTLQ 805
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,396,071
Number of Sequences: 37544
Number of extensions: 342918
Number of successful extensions: 1078
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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