Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00304
(555 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.) 129 1e-30
SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.) 125 2e-29
SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.) 107 5e-24
SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0) 83 2e-16
SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20) 31 0.63
SB_21286| Best HMM Match : DUF352 (HMM E-Value=0.47) 28 5.9
SB_49331| Best HMM Match : DUF352 (HMM E-Value=0.47) 28 5.9
SB_15989| Best HMM Match : SapB_2 (HMM E-Value=0.00013) 28 5.9
SB_45865| Best HMM Match : Adeno_E4_34 (HMM E-Value=6) 27 7.8
>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 129 bits (312), Expect = 1e-30
Identities = 60/81 (74%), Positives = 70/81 (86%)
Frame = +3
Query: 12 SVMLALDQQSPNIAAGVHENRNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKI 191
+V++AL+QQS +IA GVH R +E+VGAGDQGLMFGYATDETEE MPLTVVLAHK+NQK+
Sbjct: 118 NVLVALEQQSVDIAHGVHVGREEEDVGAGDQGLMFGYATDETEELMPLTVVLAHKMNQKL 177
Query: 192 EELRRNGEFWWARPDSKTQVT 254
E RR+G WARPDSKTQVT
Sbjct: 178 AEYRRDGTLPWARPDSKTQVT 198
Score = 102 bits (245), Expect = 2e-22
Identities = 42/77 (54%), Positives = 57/77 (74%)
Frame = +2
Query: 257 EYVFAGGATVPQRVHTVVVSLQHSEKITLETLRDEIREKVIKEVIPAQYLDERTVIHINP 436
EY F G +P RVHT+V+S+QH IT+E LR E+ EK++K V+P+++LDE T+ H+ P
Sbjct: 200 EYKFEHGRAIPLRVHTIVISVQHDPTITMENLRKELMEKIVKTVVPSKFLDEDTIFHLQP 259
Query: 437 CGLFIIGGPQSDAGPDG 487
GLF+IGGPQ DAG G
Sbjct: 260 SGLFVIGGPQGDAGLTG 276
Score = 30.7 bits (66), Expect = 0.84
Identities = 14/20 (70%), Positives = 14/20 (70%)
Frame = +3
Query: 477 GLTGRKIIVDTMAGGGRTAG 536
GLTGRKIIVDT G G G
Sbjct: 273 GLTGRKIIVDTYGGWGAHGG 292
>SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 460
Score = 125 bits (302), Expect = 2e-29
Identities = 56/81 (69%), Positives = 69/81 (85%)
Frame = +3
Query: 12 SVMLALDQQSPNIAAGVHENRNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKI 191
+V+ A++QQSP+IA GVH R+DE++GAGDQGLMFGYATDET+E MPLTVVLAH LN+++
Sbjct: 49 TVLQAIEQQSPDIAQGVHIGRSDEDLGAGDQGLMFGYATDETDELMPLTVVLAHGLNKRL 108
Query: 192 EELRRNGEFWWARPDSKTQVT 254
+ RRNG W RPDSKTQVT
Sbjct: 109 ADCRRNGSLPWVRPDSKTQVT 129
Score = 97.1 bits (231), Expect = 9e-21
Identities = 41/77 (53%), Positives = 54/77 (70%)
Frame = +2
Query: 257 EYVFAGGATVPQRVHTVVVSLQHSEKITLETLRDEIREKVIKEVIPAQYLDERTVIHINP 436
EY F GG VP RVHT+V+S+QH I L+ +R E+ + V+KEV+P +Y+D TV H+ P
Sbjct: 131 EYKFQGGKAVPLRVHTIVISVQHDPNIELDVMRKELMDYVVKEVVPEKYIDNDTVYHMQP 190
Query: 437 CGLFIIGGPQSDAGPDG 487
G F+IGGPQ DAG G
Sbjct: 191 SGSFVIGGPQGDAGLTG 207
Score = 30.7 bits (66), Expect = 0.84
Identities = 14/20 (70%), Positives = 14/20 (70%)
Frame = +3
Query: 477 GLTGRKIIVDTMAGGGRTAG 536
GLTGRKIIVDT G G G
Sbjct: 204 GLTGRKIIVDTYGGWGAHGG 223
>SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 107 bits (258), Expect = 5e-24
Identities = 52/86 (60%), Positives = 61/86 (70%)
Frame = +3
Query: 12 SVMLALDQQSPNIAAGVHENRNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKI 191
SV+LA+ +Q IA VH NR D+E+GAGDQGLMFGYATDETEE MPLT VLAHKL ++
Sbjct: 139 SVLLAIQEQVAEIAQTVHLNRRDDEIGAGDQGLMFGYATDETEELMPLTTVLAHKLCARL 198
Query: 192 EELRRNGEFWWARPDSKTQVTANMYL 269
E R+ W PD KTQVT + L
Sbjct: 199 AECRKGKILPWLLPDGKTQVTVDYRL 224
Score = 85.4 bits (202), Expect = 3e-17
Identities = 39/93 (41%), Positives = 58/93 (62%)
Frame = +2
Query: 209 WRILVGKTRFKNTGYCEYVFAGGATVPQRVHTVVVSLQHSEKITLETLRDEIREKVIKEV 388
W + GKT+ +Y GA +P+RVHTV++S QH+ + +E +R ++E +I V
Sbjct: 209 WLLPDGKTQVT----VDYRLERGACIPERVHTVLISTQHTPDVGIEEIRHHLKETIINHV 264
Query: 389 IPAQYLDERTVIHINPCGLFIIGGPQSDAGPDG 487
IP +YLD++T+ H+ P G FI GGP DAG G
Sbjct: 265 IPEKYLDDKTIFHLLPSGQFIDGGPLGDAGLTG 297
Score = 30.7 bits (66), Expect = 0.84
Identities = 14/20 (70%), Positives = 14/20 (70%)
Frame = +3
Query: 477 GLTGRKIIVDTMAGGGRTAG 536
GLTGRKIIVDT G G G
Sbjct: 294 GLTGRKIIVDTYGGWGAHGG 313
>SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)
Length = 192
Score = 82.6 bits (195), Expect = 2e-16
Identities = 37/60 (61%), Positives = 45/60 (75%)
Frame = +3
Query: 81 EEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKIEELRRNGEFWWARPDSKTQVTAN 260
E+ GAGDQGLMFGYAT+ET+ MP V AH+L ++ ELRRNG W RPD+K+QVT N
Sbjct: 8 EDQGAGDQGLMFGYATNETDSLMPAPVYYAHRLVERQSELRRNGTLPWLRPDAKSQVTIN 67
Score = 73.7 bits (173), Expect = 9e-14
Identities = 33/65 (50%), Positives = 45/65 (69%)
Frame = +2
Query: 293 RVHTVVVSLQHSEKITLETLRDEIREKVIKEVIPAQYLDERTVIHINPCGLFIIGGPQSD 472
+V VV+S QH I+L+ LR+ + E +IK V+PA++L E T+ HINP G F+IGGP D
Sbjct: 74 KVDAVVLSTQHDPSISLDDLREAVLENIIKPVLPAEWLHEGTLYHINPTGNFVIGGPVGD 133
Query: 473 AGPDG 487
AG G
Sbjct: 134 AGLTG 138
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/20 (70%), Positives = 14/20 (70%)
Frame = +3
Query: 477 GLTGRKIIVDTMAGGGRTAG 536
GLTGRKIIVDT G R G
Sbjct: 135 GLTGRKIIVDTYGGMARHGG 154
>SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)
Length = 681
Score = 31.1 bits (67), Expect = 0.63
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 126 LHNRTSSPGLLPQLPRHFCSHAPQQQCLVIVGL 28
L N T+ P + PQ P H SHA + ++I G+
Sbjct: 99 LGNETARPAIAPQEPEHLVSHANKILTVIIQGM 131
>SB_21286| Best HMM Match : DUF352 (HMM E-Value=0.47)
Length = 690
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -3
Query: 454 NYKESTWINVNYSSLIKILCRDNLFDDLFSDLISQGL--*GNLFR 326
N+KEST + N ++ILC D D+L L S GNLF+
Sbjct: 440 NHKESTDLVENVFRGLEILCNDICEDELERQLASSSFDKFGNLFK 484
>SB_49331| Best HMM Match : DUF352 (HMM E-Value=0.47)
Length = 586
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -3
Query: 454 NYKESTWINVNYSSLIKILCRDNLFDDLFSDLISQGL--*GNLFR 326
N+KEST + N ++ILC D D+L L S GNLF+
Sbjct: 440 NHKESTDLVENVFRGLEILCNDICEDELERQLASSSFDKFGNLFK 484
>SB_15989| Best HMM Match : SapB_2 (HMM E-Value=0.00013)
Length = 524
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 278 ATVPQRVHTVVVSLQHSEKITLETLRDEIRE--KVIKEVIPAQYLDERTVIHINPC 439
A +P+ H V V + +I ++L + I K+ +V AQ+ D +H++PC
Sbjct: 410 ARLPRGSHVVAVGMVDG-RILYDSLHNRIHPIGKLRGDVTYAQFYDFLNCVHVSPC 464
>SB_45865| Best HMM Match : Adeno_E4_34 (HMM E-Value=6)
Length = 766
Score = 27.5 bits (58), Expect = 7.8
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 12 SVMLALDQQSPNIAAG-VHENRNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQK 188
S +AL ++S + AAG + ++ G +M D+ EC P +++ A LN+K
Sbjct: 613 SQAVALLRRSVHAAAGRLDDSHVMSSRGTHRVEIMLRLLPDDFAECSPDSLMFARALNEK 672
Query: 189 IEEL 200
I +L
Sbjct: 673 IYKL 676
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,429,763
Number of Sequences: 59808
Number of extensions: 399678
Number of successful extensions: 990
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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