Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00304
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   1.6  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.1  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.1  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.1  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.1  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.1  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   2.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   3.6  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   6.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   6.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.4  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   8.4  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   8.4  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   8.4  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   8.4  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 279 APPANTYSQ*PVFLNLVLPTKILHF 205
           A  A  +S   VFL+L++P  IL+F
Sbjct: 3   AASATGFSASSVFLSLLIPALILYF 27


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 486 GRKIIVDTMAGGGRTAGALSLQ 551
           G+KI   T+ GG R A  + LQ
Sbjct: 313 GKKITKKTILGGNRRAKGMELQ 334


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 486 GRKIIVDTMAGGGRTAGALSLQ 551
           G+KI   T+ GG R A  + LQ
Sbjct: 313 GKKITKKTILGGNRRAKGMELQ 334


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 486 GRKIIVDTMAGGGRTAGALSLQ 551
           G+KI   T+ GG R A  + LQ
Sbjct: 313 GKKITKKTILGGNRRAKGMELQ 334


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 486 GRKIIVDTMAGGGRTAGALSLQ 551
           G+KI   T+ GG R A  + LQ
Sbjct: 313 GKKITKKTILGGNRRAKGMELQ 334


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 486 GRKIIVDTMAGGGRTAGALSLQ 551
           G+KI   T+ GG R A  + LQ
Sbjct: 313 GKKITKKTILGGNRRAKGMELQ 334


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 486 GRKIIVDTMAGGGRTAGALSLQ 551
           G+KI   T+ GG R A  + LQ
Sbjct: 313 GKKITKKTILGGNRRAKGMELQ 334


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 486 GRKIIVDTMAGGGRTAGALSLQ 551
           G+KI   T+ GG R A  + LQ
Sbjct: 381 GKKITKKTILGGNRRAKGMELQ 402


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 486 GRKIIVDTMAGGGRTAGALSLQ 551
           G+KI   T+ GG R A  + LQ
Sbjct: 381 GKKITKKTILGGNRRAKGMELQ 402


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 433 INVNYSSLIKILCRDN 386
           I  N ++LIK LCRDN
Sbjct: 590 ITRNATALIKKLCRDN 605


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 265 ICWWCNSPTESSYCSRVTATL*KDYPRDL 351
           IC+ C   T +S   R+   L  DY RD+
Sbjct: 24  ICFVCKDITSTSALYRLKLYLFCDYDRDI 52


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 224 GKTRFKNTGYC 256
           GKTR +NTG C
Sbjct: 820 GKTRHQNTGCC 830


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +3

Query: 219 WWARPDSKTQVTA 257
           WW+RP    Q T+
Sbjct: 45  WWSRPREPAQTTS 57


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -3

Query: 118 PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSS 26
           PN++P S    +++      P  M  D W+S
Sbjct: 57  PNVRPISSHQIANNVTMQLLPKLMEFDDWTS 87


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 112 CSVMQQMRQKNACR 153
           C +  Q R+KN CR
Sbjct: 389 CELHMQPRKKNCCR 402


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 112 CSVMQQMRQKNACR 153
           C +  Q R+KN CR
Sbjct: 389 CELHMQPRKKNCCR 402


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 454 NYKESTWINVNYSSLIKI 401
           NYK+  + N+NY   I I
Sbjct: 106 NYKKLQYYNINYIEQIPI 123


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 454 NYKESTWINVNYSSLIKI 401
           NYK+  + N+NY   I I
Sbjct: 106 NYKKLQYYNINYIEQIPI 123


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 454 NYKESTWINVNYSSLIKI 401
           NYK+  + N+NY   I I
Sbjct: 106 NYKKLQYYNINYIEQIPI 123


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 454 NYKESTWINVNYSSLIKI 401
           NYK+  + N+NY   I I
Sbjct: 106 NYKKLQYYNINYIEQIPI 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,601
Number of Sequences: 438
Number of extensions: 3124
Number of successful extensions: 29
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)