Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00304
(555 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g17390.1 68416.m02222 S-adenosylmethionine synthetase, putati... 105 3e-23
At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1... 103 8e-23
At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1... 103 8e-23
At4g01850.1 68417.m00242 S-adenosylmethionine synthetase 2 (SAM2... 102 1e-22
At2g36880.1 68415.m04521 S-adenosylmethionine synthetase, putati... 100 6e-22
At3g46800.1 68416.m05080 DC1 domain-containing protein contains ... 31 0.68
At2g37820.1 68415.m04643 DC1 domain-containing protein contains ... 29 2.1
At5g18390.1 68418.m02163 pentatricopeptide (PPR) repeat-containi... 28 3.6
At2g37810.1 68415.m04642 CHP-rich zinc finger protein, putative 28 3.6
At2g37780.1 68415.m04639 DC1 domain-containing protein contains ... 28 3.6
At3g07890.1 68416.m00964 RabGAP/TBC domain-containing protein si... 28 4.8
At2g37800.1 68415.m04641 DC1 domain-containing protein contains ... 28 4.8
At5g47780.1 68418.m05902 glycosyl transferase family 8 protein c... 27 6.4
At1g05055.1 68414.m00506 basic transcription factor 2, 44kD subu... 27 6.4
At3g22470.1 68416.m02840 pentatricopeptide (PPR) repeat-containi... 27 8.4
At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) simi... 27 8.4
At3g04760.1 68416.m00512 pentatricopeptide (PPR) repeat-containi... 27 8.4
At1g65180.1 68414.m07390 DC1 domain-containing protein contains ... 27 8.4
At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) simi... 27 8.4
At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almo... 27 8.4
>At3g17390.1 68416.m02222 S-adenosylmethionine synthetase, putative
similar to S-adenosylmethionine synthetase 2 (Methionine
adenosyltransferase 2, AdoMet synthetase 2)
[Catharanthus roseus] SWISS-PROT:Q96552
Length = 393
Score = 105 bits (251), Expect = 3e-23
Identities = 52/82 (63%), Positives = 62/82 (75%), Gaps = 2/82 (2%)
Frame = +3
Query: 15 VMLALDQQSPNIAAGVHEN--RNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQK 188
V++ ++QQSP+IA GVH + + EEVGAGDQG MFGYATDET E MPLT VLA KL K
Sbjct: 92 VLVNIEQQSPDIAQGVHGHLTKKPEEVGAGDQGHMFGYATDETPELMPLTHVLATKLGAK 151
Query: 189 IEELRRNGEFWWARPDSKTQVT 254
+ E+R+NG W RPD KTQVT
Sbjct: 152 LTEVRKNGTCPWLRPDGKTQVT 173
Score = 96.3 bits (229), Expect = 1e-20
Identities = 41/77 (53%), Positives = 55/77 (71%)
Frame = +2
Query: 257 EYVFAGGATVPQRVHTVVVSLQHSEKITLETLRDEIREKVIKEVIPAQYLDERTVIHINP 436
EY+ GA VP RVHTV++S QH E +T + + +++E VIK VIP +YLDE+T+ H+NP
Sbjct: 175 EYINESGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 234
Query: 437 CGLFIIGGPQSDAGPDG 487
G F+IGGP DAG G
Sbjct: 235 SGRFVIGGPHGDAGLTG 251
Score = 30.3 bits (65), Expect = 0.90
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +3
Query: 477 GLTGRKIIVDTMAGGGRTAG 536
GLTGRKII+DT G G G
Sbjct: 248 GLTGRKIIIDTYGGWGAHGG 267
>At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1)
identical to S-adenosylmethionine synthetase 1
(Methionine adenosyltransferase 1, AdoMet synthetase 1)
[Arabidopsis thaliana] SWISS-PROT:P23686
Length = 393
Score = 103 bits (247), Expect = 8e-23
Identities = 50/86 (58%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Frame = +3
Query: 15 VMLALDQQSPNIAAGVHEN--RNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQK 188
V++ ++QQSP+IA GVH + + EE+GAGDQG MFGYATDET E MPL+ VLA KL +
Sbjct: 92 VLVNIEQQSPDIAQGVHGHFTKCPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAR 151
Query: 189 IEELRRNGEFWWARPDSKTQVTANMY 266
+ E+R+NG W RPD KTQVT Y
Sbjct: 152 LTEVRKNGTCAWLRPDGKTQVTVEYY 177
Score = 93.1 bits (221), Expect = 1e-19
Identities = 41/77 (53%), Positives = 54/77 (70%)
Frame = +2
Query: 257 EYVFAGGATVPQRVHTVVVSLQHSEKITLETLRDEIREKVIKEVIPAQYLDERTVIHINP 436
EY GA VP RVHTV++S QH E +T + + +++E VIK VIP +YLDE+T+ H+NP
Sbjct: 175 EYYNDKGAMVPIRVHTVLISTQHDETVTNDEIARDLKEHVIKPVIPEKYLDEKTIFHLNP 234
Query: 437 CGLFIIGGPQSDAGPDG 487
G F+IGGP DAG G
Sbjct: 235 SGRFVIGGPHGDAGLTG 251
Score = 30.3 bits (65), Expect = 0.90
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +3
Query: 477 GLTGRKIIVDTMAGGGRTAG 536
GLTGRKII+DT G G G
Sbjct: 248 GLTGRKIIIDTYGGWGAHGG 267
>At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1)
identical to S-adenosylmethionine synthetase 1
(Methionine adenosyltransferase 1, AdoMet synthetase 1)
[Arabidopsis thaliana] SWISS-PROT:P23686
Length = 393
Score = 103 bits (247), Expect = 8e-23
Identities = 50/86 (58%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Frame = +3
Query: 15 VMLALDQQSPNIAAGVHEN--RNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQK 188
V++ ++QQSP+IA GVH + + EE+GAGDQG MFGYATDET E MPL+ VLA KL +
Sbjct: 92 VLVNIEQQSPDIAQGVHGHFTKCPEEIGAGDQGHMFGYATDETPELMPLSHVLATKLGAR 151
Query: 189 IEELRRNGEFWWARPDSKTQVTANMY 266
+ E+R+NG W RPD KTQVT Y
Sbjct: 152 LTEVRKNGTCAWLRPDGKTQVTVEYY 177
Score = 93.1 bits (221), Expect = 1e-19
Identities = 41/77 (53%), Positives = 54/77 (70%)
Frame = +2
Query: 257 EYVFAGGATVPQRVHTVVVSLQHSEKITLETLRDEIREKVIKEVIPAQYLDERTVIHINP 436
EY GA VP RVHTV++S QH E +T + + +++E VIK VIP +YLDE+T+ H+NP
Sbjct: 175 EYYNDKGAMVPIRVHTVLISTQHDETVTNDEIARDLKEHVIKPVIPEKYLDEKTIFHLNP 234
Query: 437 CGLFIIGGPQSDAGPDG 487
G F+IGGP DAG G
Sbjct: 235 SGRFVIGGPHGDAGLTG 251
Score = 30.3 bits (65), Expect = 0.90
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +3
Query: 477 GLTGRKIIVDTMAGGGRTAG 536
GLTGRKII+DT G G G
Sbjct: 248 GLTGRKIIIDTYGGWGAHGG 267
>At4g01850.1 68417.m00242 S-adenosylmethionine synthetase 2 (SAM2)
identical to S-adenosylmethionine synthetase 2
(Methionine adenosyltransferase 2, AdoMet synthetase 2)
[Arabidopsis thaliana] SWISS-PROT:P17562
Length = 393
Score = 102 bits (245), Expect = 1e-22
Identities = 48/86 (55%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Frame = +3
Query: 15 VMLALDQQSPNIAAGVHEN--RNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQK 188
V++ ++QQSP+IA GVH + + E++GAGDQG MFGYATDET E MPL+ VLA K+ +
Sbjct: 92 VLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPELMPLSHVLATKIGAR 151
Query: 189 IEELRRNGEFWWARPDSKTQVTANMY 266
+ E+R+NG W RPD KTQVT Y
Sbjct: 152 LTEVRKNGTCRWLRPDGKTQVTVEYY 177
Score = 92.7 bits (220), Expect = 1e-19
Identities = 39/77 (50%), Positives = 54/77 (70%)
Frame = +2
Query: 257 EYVFAGGATVPQRVHTVVVSLQHSEKITLETLRDEIREKVIKEVIPAQYLDERTVIHINP 436
EY GA VP RVHTV++S QH E +T + + +++E VIK +IP +YLD++T+ H+NP
Sbjct: 175 EYYNDNGAMVPVRVHTVLISTQHDETVTNDEIARDLKEHVIKPIIPEKYLDDKTIFHLNP 234
Query: 437 CGLFIIGGPQSDAGPDG 487
G F+IGGP DAG G
Sbjct: 235 SGRFVIGGPHGDAGLTG 251
Score = 30.3 bits (65), Expect = 0.90
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +3
Query: 477 GLTGRKIIVDTMAGGGRTAG 536
GLTGRKII+DT G G G
Sbjct: 248 GLTGRKIIIDTYGGWGAHGG 267
>At2g36880.1 68415.m04521 S-adenosylmethionine synthetase, putative
similar to S-adenosylmethionine synthetase 3 (Methionine
adenosyltransferase 3, AdoMet synthetase 3)
[Lycopersicon esculentum] SWISS-PROT:P43282
Length = 390
Score = 100 bits (240), Expect = 6e-22
Identities = 49/83 (59%), Positives = 62/83 (74%), Gaps = 2/83 (2%)
Frame = +3
Query: 12 SVMLALDQQSPNIAAGVHEN--RNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQ 185
+V++ ++QQSP+IA GVH + + E++GAGDQG MFGYATDET E MPLT VLA KL
Sbjct: 91 NVLVNIEQQSPDIAQGVHGHLTKKPEDIGAGDQGHMFGYATDETPELMPLTHVLATKLGA 150
Query: 186 KIEELRRNGEFWWARPDSKTQVT 254
K+ E+R+N W RPD KTQVT
Sbjct: 151 KLTEVRKNKTCPWLRPDGKTQVT 173
Score = 95.5 bits (227), Expect = 2e-20
Identities = 41/77 (53%), Positives = 55/77 (71%)
Frame = +2
Query: 257 EYVFAGGATVPQRVHTVVVSLQHSEKITLETLRDEIREKVIKEVIPAQYLDERTVIHINP 436
EY GGA +P RVHTV++S QH E +T + + +++E VIK VIPA+YLD+ T+ H+NP
Sbjct: 175 EYKNDGGAMIPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPAKYLDDNTIFHLNP 234
Query: 437 CGLFIIGGPQSDAGPDG 487
G F+IGGP DAG G
Sbjct: 235 SGRFVIGGPHGDAGLTG 251
Score = 30.3 bits (65), Expect = 0.90
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +3
Query: 477 GLTGRKIIVDTMAGGGRTAG 536
GLTGRKII+DT G G G
Sbjct: 248 GLTGRKIIIDTYGGWGAHGG 267
>At3g46800.1 68416.m05080 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 682
Score = 30.7 bits (66), Expect = 0.68
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -2
Query: 203 PELFNFLIEFVCKHYGQRHAFFCLICCITEHQALVSCPNFLVIS 72
P L NF C G R +FCL C H+A + P + I+
Sbjct: 267 PRLVNFTCN-ACGTAGDRSPYFCLQCNFMIHRACIDLPRVININ 309
>At2g37820.1 68415.m04643 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 290
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = -2
Query: 194 FNFLIEFVC---KHYGQRHAFFCLICCITEHQALVSCPNFLVISVLMHP 57
FN + +F+C K YG + C C H+ +CP L + +HP
Sbjct: 23 FNSIGDFICDGCKTYGSGKTYRCEPCNYDLHEYCATCP--LTLPTFIHP 69
>At5g18390.1 68418.m02163 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 459
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3
Query: 421 YSSLIKILCRDNLFDDLFS 365
Y+ +IK +CR+ +FDD FS
Sbjct: 360 YAPIIKGMCRNGMFDDAFS 378
>At2g37810.1 68415.m04642 CHP-rich zinc finger protein, putative
Length = 233
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -2
Query: 170 CKHYGQRHAFFCLICCITEHQALVSCPNFLVISVLMHP 57
CK YG + C C H +CP F +IS MHP
Sbjct: 34 CKTYGFGKTYRCAPCDYVLHDHCATCP-FTLIS-FMHP 69
>At2g37780.1 68415.m04639 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain
Length = 286
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 170 CKHYGQRHAFFCLICCITEHQALVSCPNFLVIS 72
CK YG+ + C C H+ +CP+ L+ S
Sbjct: 30 CKLYGEGRTYRCSDCDYDLHEYCATCPSILLNS 62
>At3g07890.1 68416.m00964 RabGAP/TBC domain-containing protein
similar to plant adhesion molecule 1 [Arabidopsis
thaliana] GI:3511223; contains Pfam profile PF00566: TBC
domain
Length = 400
Score = 27.9 bits (59), Expect = 4.8
Identities = 23/89 (25%), Positives = 39/89 (43%)
Frame = +3
Query: 3 ARGSVMLALDQQSPNIAAGVHENRNDEEVGAGDQGLMFGYATDETEECMPLTVVLAHKLN 182
+R + + L Q P + +H R + V D ++G+ + + + + LN
Sbjct: 6 SRRDLTMELQSQIPILRPSIHARRANIVVKFQD---LYGFTVEGNVDDVNV-------LN 55
Query: 183 QKIEELRRNGEFWWARPDSKTQVTANMYL 269
+ E++R G WWA SK AN YL
Sbjct: 56 EVREKVRNQGRVWWALEASK---GANWYL 81
>At2g37800.1 68415.m04641 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 396
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -2
Query: 170 CKHYGQRHAFFCLICCITEHQALVSCPNFLVISVLMHP 57
CK YG + C C H +CP+ ++ MHP
Sbjct: 168 CKTYGFGKTYRCTRCDYNLHDHCATCPS--TLATFMHP 203
>At5g47780.1 68418.m05902 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8; strong similarity to unknown protein
(emb|CAB71043.1)
Length = 616
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 454 NYKESTWINVNYSSLIKILCRDNLFDDLF 368
N +E TW+N +YS ++K L ++ D F
Sbjct: 370 NVEEFTWLNSSYSPVLKQLSSRSMIDYYF 398
>At1g05055.1 68414.m00506 basic transcription factor 2, 44kD
subunit-related contains weak similarity to
Swiss-Prot:Q13888 TFIIH basal transcription factor
complex p44 subunit (Basic transcription factor 2 44 kDa
subunit, BTF2-p44, General transcription factor IIH
polypeptide 2) [Homo sapiens]
Length = 421
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 170 CKHYGQRHAFFCLICCITEHQALVSCP 90
CKHY FCL C I H++L +CP
Sbjct: 385 CKHY------FCLDCDIYIHESLHNCP 405
>At3g22470.1 68416.m02840 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repea
Length = 619
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = -3
Query: 427 VNYSSLIKILCRDNLFDD---LFSDLISQGL 344
V YS +I LC+D FDD LF+++ +G+
Sbjct: 246 VQYSIVIDSLCKDGSFDDALSLFNEMEMKGI 276
>At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) similar
to ribosomal protein L37 GB:BAA04888 from [Homo sapiens]
Length = 95
Score = 27.1 bits (57), Expect = 8.4
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +2
Query: 83 GSWGRRPGLDVRLCNR*DRRMHAVDRSACTQTQSEN*RAQA-KWRILVGKTRFKNTGYCE 259
GS+G+R LC R RR + +S C+ R + W + + + TG
Sbjct: 6 GSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMR 65
Query: 260 YVFAGGATVPQRVHT 304
Y+ VP+R T
Sbjct: 66 YL----RNVPRRFKT 76
>At3g04760.1 68416.m00512 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 602
Score = 27.1 bits (57), Expect = 8.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 427 VNYSSLIKILCRDNLFDDLFSDLI 356
+ Y+S+I LCR+ + D+ F L+
Sbjct: 474 ITYNSMISCLCREGMVDEAFELLV 497
>At1g65180.1 68414.m07390 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 653
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -2
Query: 218 KFSISPELFNFLIEFVCKHYGQRHAFFCLICCITEHQALVSCPNF-LVISVLMH 60
+ ++ P+L +F C +G R + CL C T H +C F VI++ H
Sbjct: 240 ELTLMPKLISFTCT-TCGLHGDRSPYVCLQCNFTSHN---NCSGFPWVININRH 289
>At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) similar
to SP:Q43292 from [Arabidopsis thaliana]
Length = 95
Score = 27.1 bits (57), Expect = 8.4
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +2
Query: 83 GSWGRRPGLDVRLCNR*DRRMHAVDRSACTQTQSEN*RAQA-KWRILVGKTRFKNTGYCE 259
GS+G+R LC R RR + +S C+ R + W + + + TG
Sbjct: 6 GSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMR 65
Query: 260 YVFAGGATVPQRVHT 304
Y+ VP+R T
Sbjct: 66 YL----RNVPRRFKT 76
>At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almost
identical to GB:Q43292
Length = 95
Score = 27.1 bits (57), Expect = 8.4
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +2
Query: 83 GSWGRRPGLDVRLCNR*DRRMHAVDRSACTQTQSEN*RAQA-KWRILVGKTRFKNTGYCE 259
GS+G+R LC R RR + +S C+ R + W + + + TG
Sbjct: 6 GSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMR 65
Query: 260 YVFAGGATVPQRVHT 304
Y+ VP+R T
Sbjct: 66 YL----RNVPRRFKT 76
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,666,619
Number of Sequences: 28952
Number of extensions: 264807
Number of successful extensions: 833
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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