Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00303
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 161 6e-41
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 161 8e-41
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 161 8e-41
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 94 1e-20
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 92 5e-20
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 74 2e-14
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 38 0.002
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.007
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.007
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.015
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 34 0.020
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 32 0.061
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 32 0.081
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.25
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 30 0.33
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.43
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 29 0.75
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 28 1.00
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 3.0
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy... 27 3.0
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 27 3.0
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 25 7.0
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 7.0
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1... 25 7.0
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 25 9.3
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 161 bits (392), Expect = 6e-41
Identities = 80/115 (69%), Positives = 91/115 (79%)
Frame = +1
Query: 160 QTYHREVREGGPGNG*RILQICLGIGQTKG*AERGITIDIALWKFETSKYYVTIIDAPGH 339
+ + +E E G G+ + + + K ERGITIDIALWKFET KY VT+IDAPGH
Sbjct: 40 EKFEKEATELGKGS----FKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGH 95
Query: 340 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 504
RDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV
Sbjct: 96 RDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIV 150
Score = 137 bits (331), Expect = 1e-33
Identities = 62/66 (93%), Positives = 64/66 (96%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 236 DKLKAE 253
DKLKAE
Sbjct: 61 DKLKAE 66
Score = 57.6 bits (133), Expect = 1e-09
Identities = 26/44 (59%), Positives = 35/44 (79%)
Frame = +2
Query: 509 NKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 640
NKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+
Sbjct: 153 NKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGF 194
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 161 bits (391), Expect = 8e-41
Identities = 79/115 (68%), Positives = 91/115 (79%)
Frame = +1
Query: 160 QTYHREVREGGPGNG*RILQICLGIGQTKG*AERGITIDIALWKFETSKYYVTIIDAPGH 339
+ + +E E G G+ + + + K ERGITIDIALWKFET KY VT+IDAPGH
Sbjct: 40 EKFEKEATELGKGS----FKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGH 95
Query: 340 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 504
RDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV
Sbjct: 96 RDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIV 150
Score = 137 bits (331), Expect = 1e-33
Identities = 62/66 (93%), Positives = 64/66 (96%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 236 DKLKAE 253
DKLKAE
Sbjct: 61 DKLKAE 66
Score = 57.6 bits (133), Expect = 1e-09
Identities = 26/44 (59%), Positives = 35/44 (79%)
Frame = +2
Query: 509 NKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 640
NKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+
Sbjct: 153 NKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGF 194
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 161 bits (391), Expect = 8e-41
Identities = 79/115 (68%), Positives = 91/115 (79%)
Frame = +1
Query: 160 QTYHREVREGGPGNG*RILQICLGIGQTKG*AERGITIDIALWKFETSKYYVTIIDAPGH 339
+ + +E E G G+ + + + K ERGITIDIALWKFET KY VT+IDAPGH
Sbjct: 40 EKFEKEATELGKGS----FKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGH 95
Query: 340 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 504
RDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQLIV
Sbjct: 96 RDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIV 150
Score = 137 bits (331), Expect = 1e-33
Identities = 62/66 (93%), Positives = 64/66 (96%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 236 DKLKAE 253
DKLKAE
Sbjct: 61 DKLKAE 66
Score = 57.6 bits (133), Expect = 1e-09
Identities = 26/44 (59%), Positives = 35/44 (79%)
Frame = +2
Query: 509 NKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 640
NKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+
Sbjct: 153 NKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGF 194
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 94.3 bits (224), Expect = 1e-20
Identities = 41/83 (49%), Positives = 58/83 (69%)
Frame = +1
Query: 256 ERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 435
E+G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG
Sbjct: 299 EKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGF 358
Query: 436 SKNGQTREHALLAFTLGVKQLIV 504
+ GQTREHA+LA T G+ L+V
Sbjct: 359 ERGGQTREHAVLARTQGINHLVV 381
Score = 76.6 bits (180), Expect = 3e-15
Identities = 33/62 (53%), Positives = 45/62 (72%)
Frame = +2
Query: 68 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 247
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 248 AE 253
E
Sbjct: 296 EE 297
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 92.3 bits (219), Expect = 5e-20
Identities = 49/115 (42%), Positives = 63/115 (54%)
Frame = +1
Query: 160 QTYHREVREGGPGNG*RILQICLGIGQTKG*AERGITIDIALWKFETSKYYVTIIDAPGH 339
Q H E G G+ + T+ RG+T+D+A FE+ K I DAPGH
Sbjct: 210 QKLHNEAANSGKGS----FSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGH 265
Query: 340 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 504
RDFI MI G S AD AVL+V + FE G +NGQTREHA L LG+ +++V
Sbjct: 266 RDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVV 320
Score = 70.5 bits (165), Expect = 2e-13
Identities = 30/62 (48%), Positives = 43/62 (69%)
Frame = +2
Query: 68 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 247
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 248 AE 253
E
Sbjct: 235 EE 236
Score = 37.1 bits (82), Expect = 0.002
Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +2
Query: 509 NKMDSTEPPYSEPRFEEIKKEVSSY-IKKIGYNPAAVAFVPIS 634
NK+D +SE RF+EIK VS + IK +G+ + V FVPIS
Sbjct: 323 NKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPIS 363
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 73.7 bits (173), Expect = 2e-14
Identities = 38/82 (46%), Positives = 53/82 (64%)
Frame = +1
Query: 259 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 438
RGITI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 100 RGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP---- 155
Query: 439 KNGQTREHALLAFTLGVKQLIV 504
QTREH LLA +GVKQ++V
Sbjct: 156 ---QTREHLLLARQVGVKQIVV 174
Score = 35.1 bits (77), Expect = 0.009
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +2
Query: 62 KEKTHINIVVIGHVDSGKSTTTGHLIYKC 148
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 256 ERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 417
+RGITI+ A F + +ID PGH DF + + D AV I+ G
Sbjct: 76 QRGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
Score = 28.7 bits (61), Expect = 0.75
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCG 151
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 151
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 307 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 402
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 151
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 307 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 402
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.3 bits (75), Expect = 0.015
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +1
Query: 292 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 462
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
Score = 29.1 bits (62), Expect = 0.57
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCGGI 157
NI + H+DSGK+T T ++Y G I
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI 86
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.9 bits (74), Expect = 0.020
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 262 GITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 417
GIT I + F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 203 GITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 32.3 bits (70), Expect = 0.061
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +1
Query: 310 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 489
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 490 KQLIV 504
K +I+
Sbjct: 163 KHIII 167
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 50 PKMGKEKTHINIVVIGHVDSGKST 121
P + + INI IGHV GKST
Sbjct: 15 PAIISRQATINIGTIGHVAHGKST 38
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 31.9 bits (69), Expect = 0.081
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +1
Query: 259 RGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 417
RGIT+ ++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.25
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 307 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 417
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.9 bits (64), Expect = 0.33
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 253 AERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 357
AE+ + I+I + E +++ T+ID PG DFI N
Sbjct: 67 AEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.43
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 319 IIDAPGHRDFIKNMITGTSQADCAVLIV 402
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 28.7 bits (61), Expect = 0.75
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -2
Query: 330 SINDGNIVLASFELPESNIDCDTTLSSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIP 151
S++ + L S+ P S T L+ A ++YL+ PL S S S + +R SIP
Sbjct: 305 SVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLRSPLHGSSPSASRHTALRTSIP 364
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 28.3 bits (60), Expect = 1.00
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = -2
Query: 564 LISSNLGSLYGGSVESILFSYDELFDTEGESEQGMLTGLTVLR 436
+I S+LGSL GG+V S+ +Y ++ T G G + L +LR
Sbjct: 395 IIGSSLGSLLGGAVISLTGNYKKI--TVGSYFFGSVAALFMLR 435
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 322 IDAPGHRDFIKNMITGTSQADCAVLIV 402
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 271
Score = 26.6 bits (56), Expect = 3.0
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 4/113 (3%)
Frame = -2
Query: 507 SYDELFDTEGESEQGMLTGLTVLR-DTSFEFTGTGSYDEHSAISLRGSCDHVLDEISVSR 331
+YD F S LTG L + GTG+ H A L +H +
Sbjct: 40 AYDLKFSQIQSSTVYELTGDETLNLKFTCILNGTGAIP-HQAHLLLSDTEHPTLAVIYPA 98
Query: 330 SINDGNIV---LASFELPESNIDCDTTLSSAFSLSNTQAYLKDPLPISWASFS 181
S++ G + L F++P S + D+TL++ +++ + LP+ S +
Sbjct: 99 SVSQGGVASLELRLFDIPTSLLRSDSTLTAKLLVASFGETIPFSLPLGQLSIN 151
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 26.6 bits (56), Expect = 3.0
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = -2
Query: 393 HSAISLRGSCDHVLD--EISVSRSINDGNIVLASFELPESNID-CDTTLSSAFSLSNTQA 223
H ++ S ++D +S+ +SIN + SF +++ CD + S FS NT +
Sbjct: 249 HYVFAISSSSLQIIDINTLSLVKSINLKDDESFSFISRLTSVHFCDRQIFSKFSAVNTAS 308
Query: 222 YLKDPLPISWASFSNFSMVRLS 157
K I ASFS S + L+
Sbjct: 309 TSKTSDTIERASFSKPSFIFLT 330
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 7.0
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +3
Query: 537 TVSPDLRKSRRKYPHTSRRLATTQLLSLSC 626
+ +PD+ ++PHT +R +T + L + C
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRC 174
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -3
Query: 242 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 114
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.4 bits (53), Expect = 7.0
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 170 IEKFEKEA-QEMGKGSFKYAWVLDKLKAELSVVSQSILLSGSSKLASTMLPSLM 328
IEK+ E +E+GKG+ +A+ + ELSV + + ++++ T+ PS++
Sbjct: 3 IEKYTPEQIEELGKGARDFAFAHGVVFTELSVSKEGRNI--ATQIPITLFPSVI 54
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 9.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 197 PGPPSRTSRWYVCQYHHIC 141
P PP +T + Y QY+ +C
Sbjct: 8 PAPPKKTLQLYTPQYYGLC 26
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,146
Number of Sequences: 5004
Number of extensions: 54096
Number of successful extensions: 237
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -