Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00303
(643 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 104 7e-23
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 98 6e-21
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 97 8e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 89 4e-18
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 36 0.028
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 32 0.34
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.34
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 31 0.80
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 1.8
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 29 4.2
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 28 5.6
SB_19621| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 28 7.4
SB_15615| Best HMM Match : SAMP (HMM E-Value=0.06) 27 9.8
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 104 bits (249), Expect = 7e-23
Identities = 47/78 (60%), Positives = 60/78 (76%)
Frame = +1
Query: 271 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 450
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 451 TREHALLAFTLGVKQLIV 504
TREHA+L +LGV QLIV
Sbjct: 61 TREHAILVRSLGVTQLIV 78
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.9 bits (233), Expect = 6e-21
Identities = 53/81 (65%), Positives = 57/81 (70%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+ S +
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEVLCFS-SCLLFM 59
Query: 236 DKLKAELSVVSQSILLSGSSK 298
KLK EL + L SK
Sbjct: 60 SKLKFELPCTHKIYFLFKLSK 80
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 97.5 bits (232), Expect = 8e-21
Identities = 40/83 (48%), Positives = 60/83 (72%)
Frame = +1
Query: 256 ERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 435
++G T+++ F+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G
Sbjct: 205 DKGNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGF 264
Query: 436 SKNGQTREHALLAFTLGVKQLIV 504
+ GQTREHA+LA T GVK L++
Sbjct: 265 ERGGQTREHAMLAKTAGVKHLVI 287
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/33 (45%), Positives = 25/33 (75%)
Frame = +2
Query: 509 NKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 607
NKMD ++E R+EEIK +++ ++KK+G+NP
Sbjct: 290 NKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +2
Query: 140 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 253
Y G +DKRT+EK+E+EA+E + ++ +W LD + E
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEE 203
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 88.6 bits (210), Expect = 4e-18
Identities = 40/49 (81%), Positives = 43/49 (87%)
Frame = +1
Query: 232 IGQTKG*AERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 378
+ + K ERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 12 LDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = +2
Query: 200 MGKGSFKYAWVLDKLKAE 253
MGKGSFKYAWVLDKLKAE
Sbjct: 1 MGKGSFKYAWVLDKLKAE 18
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 35.9 bits (79), Expect = 0.028
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +1
Query: 256 ERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 417
+RGI++ ++ F + I+D PGH+DF ++ + D ++++ G
Sbjct: 62 QRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 313 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 417
+T ID PGH F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 32.3 bits (70), Expect = 0.34
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +1
Query: 262 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 408
GIT I + + + +D PGH F G D +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 151
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 307 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 417
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 31.1 bits (67), Expect = 0.80
Identities = 24/77 (31%), Positives = 35/77 (45%)
Frame = -2
Query: 549 LGSLYGGSVESILFSYDELFDTEGESEQGMLTGLTVLRDTSFEFTGTGSYDEHSAISLRG 370
+GSL+ +VES +F Y F T GE + + + L S F + + S+ G
Sbjct: 46 VGSLHPSTVESTIFEY---FSTLGEQVEHVKC-IRTLSGKSKGFAFVRLRKKEAVESVLG 101
Query: 369 SCDHVLDEISVSRSIND 319
DHV+D VS D
Sbjct: 102 RDDHVIDNSDVSMEKQD 118
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 319 IIDAPGHRDFIKNMITGTSQADCAVLIV 402
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -2
Query: 486 TEGESEQGMLTGLTVLRDTSFEFTGTGSYDEHSAISLRGSCDH--VLDEISVSRSINDGN 313
T G SE + G TVL +++ GT E +A L V E S+S ++
Sbjct: 1469 TTGASESTVAPGTTVLPESTVT-PGTTVSSESTATPLTNLASESTVTLETSISSEASEST 1527
Query: 312 IVLASFELPESNIDCDTTLSS 250
+ + PES + +TT++S
Sbjct: 1528 VASGTTLAPESTVAPETTVAS 1548
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 71 THINIVVIGHVDSGKSTTTGHLIY 142
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 178
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +1
Query: 322 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 501
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 502 V 504
+
Sbjct: 123 I 123
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 28.3 bits (60), Expect = 5.6
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 13/80 (16%)
Frame = +1
Query: 256 ERGITIDIALWKFETSK-------------YYVTIIDAPGHRDFIKNMITGTSQADCAVL 396
ERGIT+D+ F+ + +T++D PGH IK +I G A +
Sbjct: 72 ERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG------AQI 125
Query: 397 IVAAGTGEFEAGISKNGQTR 456
I GT E G ++G+ +
Sbjct: 126 IGECGT--IEGGFGQSGKVK 143
>SB_19621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 28.3 bits (60), Expect = 5.6
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = +2
Query: 128 GHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAELSVVSQSILLSGSSKLAS 307
GH G T E + ++M K F Y ++LDK EL SQ I + + S
Sbjct: 389 GHSTTSKDGALAETKIATEDKVKKMEKVLFDYRFLLDKSNFELQQHSQHIEAVRKNAVES 448
Query: 308 TMLPSLMLLD--TEISSRT 358
+ L D TE+ S+T
Sbjct: 449 ITSAIIKLKDFQTEVESKT 467
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/77 (25%), Positives = 37/77 (48%)
Frame = +2
Query: 83 IVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAELSV 262
IV + D G +I GG+ K IE KEA++ + + ++KLK E++
Sbjct: 291 IVNVSARDKGTGREQQIVIQSSGGLSKDAIENMIKEAEKYAEADKQKK--VEKLKEEIAK 348
Query: 263 VSQSILLSGSSKLASTM 313
V + +L + ++ T+
Sbjct: 349 V-REVLANKDNETGETI 364
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 5 TSYLGYYTQFVIRD*PKMGKEK-THINIVVIGHVDSGKSTTTGHLIY 142
T+ LG ++++R +M + + + V+G+VD+GKST G L +
Sbjct: 207 TAELGTVGEYLVR--VRMDENDFMEVRVAVVGNVDAGKSTLLGVLTH 251
>SB_15615| Best HMM Match : SAMP (HMM E-Value=0.06)
Length = 932
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 528 SVESILFSYDELFDTEGESEQGMLTGLT-VLRDTSFEFTGTGSYDEHS 388
S++ L S +E D EGE+E+G L ++ D E G GS +E S
Sbjct: 12 SLDEALSSEEEDDDEEGENEEGEDGNLADLINDDIEEEQGEGSVEEKS 59
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,041,989
Number of Sequences: 59808
Number of extensions: 415191
Number of successful extensions: 1211
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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