Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00303
(643 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 168 3e-42
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 168 3e-42
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 166 1e-41
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 142 3e-34
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 2e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 114 4e-26
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 114 4e-26
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 103 1e-22
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 71 5e-13
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 71 5e-13
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 69 3e-12
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 69 3e-12
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 69 3e-12
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 38 0.006
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 38 0.008
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.075
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 33 0.23
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.23
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.23
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 32 0.40
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 32 0.40
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.70
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.70
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 0.93
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 1.6
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 30 1.6
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 29 2.1
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 2.1
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 2.1
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 2.1
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 2.1
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 3.7
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 28 4.9
AF039045-9|AAB94200.1| 315|Caenorhabditis elegans Hypothetical ... 28 4.9
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z47808-7|CAA87771.2| 934|Caenorhabditis elegans Hypothetical pr... 27 8.6
U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr... 27 8.6
L23651-8|AAK84495.1| 500|Caenorhabditis elegans Hypothetical pr... 27 8.6
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 168 bits (409), Expect = 3e-42
Identities = 83/115 (72%), Positives = 94/115 (81%)
Frame = +1
Query: 160 QTYHREVREGGPGNG*RILQICLGIGQTKG*AERGITIDIALWKFETSKYYVTIIDAPGH 339
+ + +E +E G G+ + + + K ERGITIDIALWKFET+KYY+TIIDAPGH
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 340 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 504
RDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV
Sbjct: 96 RDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIV 150
Score = 142 bits (343), Expect = 3e-34
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 236 DKLKAE 253
DKLKAE
Sbjct: 61 DKLKAE 66
Score = 75.8 bits (178), Expect = 2e-14
Identities = 34/45 (75%), Positives = 38/45 (84%)
Frame = +2
Query: 509 NKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWH 643
NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++
Sbjct: 153 NKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFN 197
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 168 bits (409), Expect = 3e-42
Identities = 83/115 (72%), Positives = 94/115 (81%)
Frame = +1
Query: 160 QTYHREVREGGPGNG*RILQICLGIGQTKG*AERGITIDIALWKFETSKYYVTIIDAPGH 339
+ + +E +E G G+ + + + K ERGITIDIALWKFET+KYY+TIIDAPGH
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 340 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 504
RDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV
Sbjct: 96 RDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIV 150
Score = 142 bits (343), Expect = 3e-34
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 236 DKLKAE 253
DKLKAE
Sbjct: 61 DKLKAE 66
Score = 75.8 bits (178), Expect = 2e-14
Identities = 34/45 (75%), Positives = 38/45 (84%)
Frame = +2
Query: 509 NKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWH 643
NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++
Sbjct: 153 NKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFN 197
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 166 bits (404), Expect = 1e-41
Identities = 81/114 (71%), Positives = 93/114 (81%)
Frame = +1
Query: 160 QTYHREVREGGPGNG*RILQICLGIGQTKG*AERGITIDIALWKFETSKYYVTIIDAPGH 339
+ + +E +E G G+ + + + K ERGITIDIALWKFET+KYY+TIIDAPGH
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 340 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 501
RDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQL+
Sbjct: 96 RDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLV 149
Score = 142 bits (343), Expect = 3e-34
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 236 DKLKAE 253
DKLKAE
Sbjct: 61 DKLKAE 66
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 142 bits (343), Expect = 3e-34
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 236 DKLKAE 253
DKLKAE
Sbjct: 61 DKLKAE 66
Score = 108 bits (259), Expect = 4e-24
Identities = 52/82 (63%), Positives = 63/82 (76%)
Frame = +1
Query: 160 QTYHREVREGGPGNG*RILQICLGIGQTKG*AERGITIDIALWKFETSKYYVTIIDAPGH 339
+ + +E +E G G+ + + + K ERGITIDIALWKFET+KYY+TIIDAPGH
Sbjct: 40 EKFEKEAQEMGKGS----FKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 340 RDFIKNMITGTSQADCAVLIVA 405
RDFIKNMITGTSQADCAVL+VA
Sbjct: 96 RDFIKNMITGTSQADCAVLVVA 117
Score = 75.8 bits (178), Expect = 2e-14
Identities = 34/45 (75%), Positives = 38/45 (84%)
Frame = +2
Query: 509 NKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWH 643
NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++
Sbjct: 119 NKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFN 163
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 2e-33
Identities = 64/68 (94%), Positives = 64/68 (94%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 235
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 236 DKLKAELS 259
DKLK S
Sbjct: 61 DKLKVTKS 68
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 114 bits (275), Expect = 4e-26
Identities = 54/91 (59%), Positives = 67/91 (73%)
Frame = +1
Query: 232 IGQTKG*AERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 411
+ +T+ ERG+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A
Sbjct: 223 LDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNAT 282
Query: 412 TGEFEAGISKNGQTREHALLAFTLGVKQLIV 504
TGEFE G GQT+EHALL +LGV QLIV
Sbjct: 283 TGEFETGFENGGQTKEHALLLRSLGVTQLIV 313
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/63 (53%), Positives = 46/63 (73%)
Frame = +2
Query: 65 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 244
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 245 KAE 253
+ E
Sbjct: 227 EEE 229
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/45 (35%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Frame = +2
Query: 509 NKMDSTEPPYSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGW 640
NK+D+ + +S+ RF+EIK +S ++ ++ G++ FVP+SG+
Sbjct: 316 NKLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKP--KFVPVSGF 356
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 114 bits (275), Expect = 4e-26
Identities = 54/91 (59%), Positives = 67/91 (73%)
Frame = +1
Query: 232 IGQTKG*AERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 411
+ +T+ ERG+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A
Sbjct: 241 LDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNAT 300
Query: 412 TGEFEAGISKNGQTREHALLAFTLGVKQLIV 504
TGEFE G GQT+EHALL +LGV QLIV
Sbjct: 301 TGEFETGFENGGQTKEHALLLRSLGVTQLIV 331
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/63 (53%), Positives = 46/63 (73%)
Frame = +2
Query: 65 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 244
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 245 KAE 253
+ E
Sbjct: 245 EEE 247
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/45 (35%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Frame = +2
Query: 509 NKMDSTEPPYSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGW 640
NK+D+ + +S+ RF+EIK +S ++ ++ G++ FVP+SG+
Sbjct: 334 NKLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKP--KFVPVSGF 374
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 103 bits (247), Expect = 1e-22
Identities = 50/115 (43%), Positives = 72/115 (62%)
Frame = +1
Query: 160 QTYHREVREGGPGNG*RILQICLGIGQTKG*AERGITIDIALWKFETSKYYVTIIDAPGH 339
+ Y RE +E G + L C+ + E+G T+++ FET K + TI+DAPGH
Sbjct: 142 EKYEREAKEKGRESW--YLSWCMDTNDEE--REKGKTVEVGRAYFETEKRHFTILDAPGH 197
Query: 340 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 504
+ F+ NMI G +QAD AVL+++A GEFE G + GQTREH++L T GVK L++
Sbjct: 198 KSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHSMLVKTAGVKHLVI 252
Score = 75.4 bits (177), Expect = 3e-14
Identities = 31/60 (51%), Positives = 45/60 (75%)
Frame = +2
Query: 59 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 238
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Frame = +2
Query: 509 NKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAA-VAFVPISG 637
NKMD + E RF+EI+ +++ +++K+G+NP + +VP SG
Sbjct: 255 NKMDDPTVKWEEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSG 298
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 71.3 bits (167), Expect = 5e-13
Identities = 39/83 (46%), Positives = 52/83 (62%)
Frame = +1
Query: 256 ERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 435
+RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 91 KRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME--- 147
Query: 436 SKNGQTREHALLAFTLGVKQLIV 504
QT+EH +LA +GVK + +
Sbjct: 148 ----QTKEHLILAKQVGVKNMAI 166
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 68 KTHINIVVIGHVDSGKSTTT 127
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 71.3 bits (167), Expect = 5e-13
Identities = 39/83 (46%), Positives = 52/83 (62%)
Frame = +1
Query: 256 ERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 435
+RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E
Sbjct: 91 KRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME--- 147
Query: 436 SKNGQTREHALLAFTLGVKQLIV 504
QT+EH +LA +GVK + +
Sbjct: 148 ----QTKEHLILAKQVGVKNMAI 166
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 68 KTHINIVVIGHVDSGKSTTT 127
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 68.9 bits (161), Expect = 3e-12
Identities = 38/77 (49%), Positives = 49/77 (63%)
Frame = +1
Query: 259 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 438
RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 96 RGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP---- 151
Query: 439 KNGQTREHALLAFTLGV 489
QTREH LLA +GV
Sbjct: 152 ---QTREHLLLARQVGV 165
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2
Query: 62 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKG 211
++K H+N+ IGHVD GK+T T ++ G R E + +E +G
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG 97
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 68.9 bits (161), Expect = 3e-12
Identities = 38/77 (49%), Positives = 49/77 (63%)
Frame = +1
Query: 259 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 438
RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 97 RGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP---- 152
Query: 439 KNGQTREHALLAFTLGV 489
QTREH LLA +GV
Sbjct: 153 ---QTREHLLLARQVGV 166
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2
Query: 62 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKG 211
++K H+N+ IGHVD GK+T T ++ G R E + +E +G
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG 98
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 68.9 bits (161), Expect = 3e-12
Identities = 38/77 (49%), Positives = 49/77 (63%)
Frame = +1
Query: 259 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 438
RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 97 RGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP---- 152
Query: 439 KNGQTREHALLAFTLGV 489
QTREH LLA +GV
Sbjct: 153 ---QTREHLLLARQVGV 166
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +2
Query: 62 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKG 211
++K H+N+ IGHVD GK+T T ++ G R E + +E +G
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG 98
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 262 GITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 417
GIT I + E +K VT +D PGH F G AD VL+VAA G
Sbjct: 188 GITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDG 240
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 256 ERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 417
ERGIT+ Y + +ID PGH DF + + D +L+VAA G
Sbjct: 85 ERGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 196
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.075
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCGGI 157
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 256 ERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 417
ERGIT+ A + + + +ID PGH DF + D V+++ G
Sbjct: 73 ERGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 80 NIVVIGHVDSGKSTTTGHLIYKCGGID 160
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
Score = 32.7 bits (71), Expect = 0.23
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = +1
Query: 256 ERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 417
+RGITI A + + IID PGH DF + D AVL++ G G
Sbjct: 95 QRGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG 147
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 32.7 bits (71), Expect = 0.23
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +1
Query: 313 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 492
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 493 QLIV 504
++I+
Sbjct: 127 RVII 130
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 77 INIVVIGHVDSGKSTTT 127
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 151
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +1
Query: 268 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 417
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 56 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 151
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +1
Query: 268 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 417
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 31.9 bits (69), Expect = 0.40
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +1
Query: 226 LGIGQTKG*AERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 405
L I + +G + + + I + Y + IID PGH +F M AD V++V
Sbjct: 174 LFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVD 233
Query: 406 AGTG 417
A G
Sbjct: 234 AHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 31.9 bits (69), Expect = 0.40
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +1
Query: 226 LGIGQTKG*AERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 405
L I + +G + + + I + Y + IID PGH +F M AD V++V
Sbjct: 49 LFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVD 108
Query: 406 AGTG 417
A G
Sbjct: 109 AHEG 112
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 32 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 142
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 32 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 142
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 30.7 bits (66), Expect = 0.93
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 310 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 405
+V+ +D PGH + M+ G + D A L+VA
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVA 159
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 319 IIDAPGHRDFIKNMITGTSQADCAVLIV 402
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 506 PTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 387
PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 16 PTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 259 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 402
RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 67 RGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 259 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 402
RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 67 RGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 576 PHTSRRLATTQLLSLSCPFLD 638
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 576 PHTSRRLATTQLLSLSCPFLD 638
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 576 PHTSRRLATTQLLSLSCPFLD 638
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 576 PHTSRRLATTQLLSLSCPFLD 638
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 77 INIVVIGHVDSGKSTTT 127
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 28.3 bits (60), Expect = 4.9
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Frame = -2
Query: 513 LFSYDELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--V 355
L E + +E E G+ L V RD F + +GTGS + H ++R DH +
Sbjct: 19 LMKKTEHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVI 78
Query: 354 LDEISVSRSINDGNIVLASFELPE---SNIDCDTTLS 253
+ S S +D I S SN+D LS
Sbjct: 79 SENFKFSGSKSDAEIPSTSNRCESFKWSNLDYSKYLS 115
>AF039045-9|AAB94200.1| 315|Caenorhabditis elegans Hypothetical
protein F15E11.3 protein.
Length = 315
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 209 GSFKYAWVLDKLKAELSVVSQSILLSGSSKL 301
GS KY WVLDK + + V + L++ S L
Sbjct: 218 GSLKYIWVLDKTTSAILVENNPNLIAKSKAL 248
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 313 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 408
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>Z47808-7|CAA87771.2| 934|Caenorhabditis elegans Hypothetical
protein D2013.5 protein.
Length = 934
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 173 EKFEKEAQEMGKGSFKYAWVLDKLKAELSVVSQSILLS 286
E+ +K +EM K +Y L++L+ E V+ Q +LLS
Sbjct: 211 ERIQKLQEEMLKTQSQYQRELERLEKENKVLKQRLLLS 248
>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical
protein R03G5.3 protein.
Length = 1311
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -2
Query: 561 ISSNLGSLYGGSVESILFSYDELFDTEGESEQGMLTGLTVLRDTSFE 421
+S N +YG + + F+Y F +E S + G +L+DT+F+
Sbjct: 34 VSKNCTVVYGDIIVNSTFNYTFPFLSEKLSNIEKVIGRVILKDTAFK 80
>L23651-8|AAK84495.1| 500|Caenorhabditis elegans Hypothetical
protein C29E4.10 protein.
Length = 500
Score = 27.5 bits (58), Expect = 8.6
Identities = 31/138 (22%), Positives = 62/138 (44%), Gaps = 1/138 (0%)
Frame = -2
Query: 531 GSVESILFSYDELFDTEGESEQGMLTGLTVLRDTSFEFTGTGSYDEHSAISLRGSCDHV- 355
G E+++ S+ T+ + G +LR++S F G G+Y ++ G +
Sbjct: 225 GYEENLVISFSAFQSTQKYITSHVKRGWKILRESSGRFDGGGTYVTYT----NGKDSTIF 280
Query: 354 LDEISVSRSINDGNIVLASFELPESNIDCDTTLSSAFSLSNTQAYLKDPLPISWASFSNF 175
++ +S +S+ + + P N+ + S FS S + + LP++ SF
Sbjct: 281 VETMSYKKSLCEYSSPRPYHVKPRLNMSLNFGPSKFFSKS-VNSTITILLPVN--SFGIL 337
Query: 174 SMVRLSIPPHL*IK*PVV 121
+ + +S P + IK P+V
Sbjct: 338 TTLPVSTPKRVTIKTPLV 355
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,892,659
Number of Sequences: 27780
Number of extensions: 307652
Number of successful extensions: 942
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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