Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00302
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 30 1.9
03_04_0006 + 16257288-16259522 30 1.9
01_06_0456 + 29521282-29522064 29 2.4
06_03_0854 + 25400855-25403741,25406174-25407708 29 3.2
03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399 29 3.2
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 29 3.2
12_02_0077 - 13288916-13289659,13289689-13289691 28 7.5
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 28 7.5
04_03_0094 - 11113279-11114469 28 7.5
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550... 28 7.5
10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142 27 9.9
06_03_0507 + 21603472-21603750,21604371-21604463,21605046-216053... 27 9.9
03_04_0204 - 18444903-18445054,18445445-18445676,18445765-184458... 27 9.9
03_01_0037 - 335646-335855,336480-336686,336962-337129,337377-33... 27 9.9
02_04_0220 - 21014225-21014386,21014492-21014572,21014739-210149... 27 9.9
01_06_1759 + 39689410-39689573,39689728-39689923,39690014-396901... 27 9.9
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -1
Query: 297 TTLHAWNETPCARRFIDR 244
TT AW ETPCA RF R
Sbjct: 560 TTTEAWVETPCAHRFHSR 577
>03_04_0006 + 16257288-16259522
Length = 744
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -2
Query: 176 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 24
A+RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>01_06_0456 + 29521282-29522064
Length = 260
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -3
Query: 364 AWQC--PRTGSRGSFKRRRAFPPRHHSARLERNTVRPPIYRPRTASA 230
AW+C P +G+RG +RRR P S R R R RP SA
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSR-ADRLDTLRPYVTSA 57
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 176 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 51
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399
Length = 146
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +3
Query: 264 RTVFRSKRAEW*RGGNARRRLKLPRDPVRGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKP 443
R + +R E G +RR L D +RG+ + A H AG + RG KP
Sbjct: 59 RCIAEGRREEEEEVGRSRRGKDLDLDDMRGYGET-----ATHHGLRLAGREEVSPRGGKP 113
Query: 444 RVEQKGK 464
RV+ G+
Sbjct: 114 RVDNGGR 120
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 530 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 637
YK F A G RKV GIT + PS+ D+AF S +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669
>12_02_0077 - 13288916-13289659,13289689-13289691
Length = 248
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 119 ESSSTGSSFPADSPKPVPLAVVSLDSR 39
++ S G S P DS + VP+ VV+L R
Sbjct: 3 DNQSLGKSLPKDSRRHVPVGVVALKKR 29
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 261 GRTVFRSKR--AEW*RGGNARRRLKLPRDPVRGHCQAGSLTGA 383
G+T+ R R A W RG A RR +LP G +AG G+
Sbjct: 36 GQTLTRGPRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLGS 78
>04_03_0094 - 11113279-11114469
Length = 396
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 8 RWINEIPTVPIYYLAKPQPRERAWENQRGKKT 103
RW N VP+ L P+ ER W N G+KT
Sbjct: 39 RWRNVHAAVPVVDLVDPKKGER-WGNVSGQKT 69
>04_01_0416 -
5504415-5504590,5509032-5509116,5509190-5509322,
5509426-5510312
Length = 426
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -2
Query: 149 PLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDS 42
PL+ P AR SSTGSSFP S P ++ L S
Sbjct: 47 PLIHPTPARF-ISSTGSSFPPYSEPPPSAPMLELGS 81
>10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142
Length = 407
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/84 (25%), Positives = 34/84 (40%)
Frame = -1
Query: 426 ELALGHLRYSLTDVPPQSNSPPGSVLEPDHAGVLNXDERFRHVTTLHAWNETPCARRFID 247
E GH + + D N PGS + +H+ VLN + R A+ + P ++
Sbjct: 313 ETQAGHWQNGVLDTLSTQNIIPGSPIAVNHSKVLNAVQEARRAAE-RAY-DVPRVDDKVN 370
Query: 246 RAPLPPNRVSNETMKVVVFQRRSR 175
RA N+ +N V + R
Sbjct: 371 RAVASANKAANAARVAAVKAAQKR 394
>06_03_0507 +
21603472-21603750,21604371-21604463,21605046-21605372,
21605588-21605863,21606095-21607114
Length = 664
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -3
Query: 379 PVKLPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPP 257
P++LPA + P T + +R +AF +S R ++T RPP
Sbjct: 398 PLQLPAGEPPVTPAWNDTQRSKAFT---YSIRARKDTNRPP 435
>03_04_0204 -
18444903-18445054,18445445-18445676,18445765-18445836,
18446201-18446347,18446559-18446614,18446727-18446832,
18446938-18447025,18447112-18447230,18448975-18449580,
18449803-18449898,18450232-18450422,18453287-18453416,
18453531-18453566
Length = 676
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 325 KRRRAFPPRHHSARLERNTVRPPIYRPRTASAQPSK 218
++ ++FPP H+ +++ T PP P AS P K
Sbjct: 340 QKTKSFPPTEHTNKIQPATQTPP---PAAASKTPQK 372
>03_01_0037 -
335646-335855,336480-336686,336962-337129,337377-337973
Length = 393
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 195 PLLSLFHYLLGWAEAVRGR*IGGRTVFRSKRAEW*RGGNARRRLK 329
PLLSL + WA+AV R I R + A+W ++RR L+
Sbjct: 42 PLLSLLSAVPDWADAVSERRIRDRRPLYT-HADWREHRSSRRHLR 85
>02_04_0220 -
21014225-21014386,21014492-21014572,21014739-21014938,
21014999-21015157,21015248-21015377,21015520-21015673,
21015785-21015867,21015981-21016040,21016131-21016217
Length = 371
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 348 RGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKPRVEQKGKSWL 473
+GH +T A KNNAG L+ Q Q+ Q GK L
Sbjct: 212 KGHLWRSQITAAKEDKKNNAGALQLLQL-QEEACRQSGKDGL 252
>01_06_1759 +
39689410-39689573,39689728-39689923,39690014-39690103,
39690221-39690277,39690391-39690460,39690747-39690811,
39691408-39691462,39691704-39691831,39691919-39691950,
39692205-39692274,39692723-39692824,39692921-39693010,
39693084-39693232,39693620-39693731,39695332-39695412,
39695481-39695705,39695815-39695937,39696021-39696137
Length = 641
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1
Query: 420 ALGHLRYSLTDVPPQSNSPPGSVLEP 343
ALGH+ L + P ++ PP ++P
Sbjct: 494 ALGHIELDLPEAPEKAPKPPAQAVDP 519
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,390,723
Number of Sequences: 37544
Number of extensions: 439829
Number of successful extensions: 1507
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1505
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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