Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00302
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   1.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.5  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   6.0  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   6.0  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   6.0  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   7.9  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    21   7.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.9  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = -1

Query: 462 CPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAG 331
           C  +P   S+ + L+   +  +  +   Q NSP  +   P H+G
Sbjct: 30  CTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSG 73


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 482 CSVRIGTAKHGLSIL*YKEFLARGARKVTTGITGL 586
           CS  IG   H L     KEF  R   +++ GI  +
Sbjct: 168 CSTPIGNLSHALLKDPVKEFWERRTLQISDGIENI 202


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 482 CSVRIGTAKHGLSIL*YKEFLARGARKVTTGITGL 586
           CS  IG   H L     KEF  R   +++ GI  +
Sbjct: 221 CSTPIGNLSHALLKDPVKEFWERRTLQISDGIENI 255


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 181 SSLKNHYFHCFITYSVGRK 237
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 160 VGDRFARSSLKNHYFHCFI 216
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 160 VGDRFARSSLKNHYFHCFI 216
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 188 SDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSP 78
           +D R   SP   TP+ + Y   +E+ +  S F  D+P
Sbjct: 21  NDKRIYLSPR--TPIKNVYKNNIETKNQLSPFNIDTP 55


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +2

Query: 299 TWRKRSSXFKTPA*SGSRTLPGGEFDWG 382
           +WR   S F     +G   + G  F WG
Sbjct: 227 SWRITHSYFMPDPLAGDYNIGGLNFQWG 254


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -1

Query: 237 LPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQCQTRVKLNRVFFP 91
           +PP  V     K +V   R+ E     C  ++  +QC  +    + FFP
Sbjct: 97  MPPEEVV--IGKEIVAVCRNEEYTGDDCQKTYQYVQCHYKQNPEKFFFP 143


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 155 ATPLMSPYNARLESSSTGSSFP 90
           A  + SP   +   SSTGSS P
Sbjct: 347 AKQMASPEPPKSSESSTGSSIP 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,659
Number of Sequences: 438
Number of extensions: 4254
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)